Shifts in life-history traits may accompany other evolutionary changes in mammals during climate oscillations or long-term isolation or in response to predator pressure among other factors. Here, we studied two extinct endemic ruminant species from Java (Indonesia), the deer Axis lydekkeri and the antelope Duboisia santeng. These two species are part of the Middle Pleistocene Stegodon-Homo erectus fauna. Mortality profiles based on their fossil remains were reconstructed to address the life-history strategies of these two species. Individual age was estimated from mandibular and isolated teeth using the Quadratic Crown Height Method. We found that the mortality profiles for both species are L-shaped with both a high juvenile mortality but also a substantial survival after senescence. These results correspond with what is known thus far about life-history traits of medium-sized continental ungulates with perhaps an indication of a shift toward a slower life, with maximum survivability around 70–80% of potential ecological longevity. We further discuss differences in the shapes of the profiles of the two ruminants in light of the presence of Homo erectus hunter-gatherers.

Our ability to measure evolution by natural selection in the fossil record is limited by the near impossibility of estimating the fecundity and thus relative fitness of most fossil organisms. Neocheilostome bryozoans are an important exception, because they have calcified larval brood chambers known as ovicells that provide an approximate estimate of the colony’s sexual fecundity. This clade has a rich fossil record dating back ~100 million years, providing potential opportunities to observe changes in relative fitness and natural selection through many past intervals of environmental change. However, neocheilostome fossil specimens are often highly fragmented, and fragments are not necessarily randomized subsets of a colony. To make use of the majority of the neocheilostome fossil record, we need to test the effect colony organization has on our methods of inferring colony fecundity from fragmented specimens.

In this study, we measure colony fecundity in a population of Recent neocheilostome bryozoan specimens of the species Parasmittina eccentrica Winston & Jackson, 2021 and quantify the nonrandom spatial arrangement of ovicells due to colony organization. We then simulate fragmenting these specimens and test the statistical robustness of standard methods one might use to reconstruct fecundity from fossil specimens. We find that ovicells are clustered and concentrated at mid-distances from the ancestrula (the oldest part of the colony). As a result, estimates of a colony’s fecundity from a single fragment have higher variance than would be expected if ovicells were randomly distributed. When estimating average population fecundity, observed variance among fossil fragments is a better estimator of sample variance than methods that assume spatial independence (such as a binomial distribution), especially for fragment sizes of 8 mm or less. While there is much to be learned about neocheilostome ovicell arrangement across taxa and environments, we can robustly estimate fecundity from small fossil fragments even in extinct neocheilostome species.

The idea that space and time act equivalently in structuring ecological communities has historically been predicted based on qualitative observations. The space–time equivalence hypothesis can be stated in terms of ergodicity: that system averages over space and time are equivalent. We explicitly examine ergodicity in the fossil mammal community structures of western Europe’s middle and Late Pleistocene, focusing on warm periods (corresponding to odd Marine Isotope Stages). Support for ergodicity is present in rich guilds but absent in the most sparsely occupied guilds. Absence of ergodicity can be attributed to chaotic responses to climate cycles over the study region, which have previously shown to violate traditional community convergence models. We suggest that these responses disproportionately disrupted sparsely occupied guilds, leading to non-ergodic dynamics controlling their assembly. Ergodicity may be better established across glacial refuges, at finer temporal scales, or across more climatically stable geographic regions.

Polymorphism, the occurrence of different morphs of a trait within the population of a single species, plays a crucial role in species diversification, genetic variation, and adaptation. Detecting polymorphism in a single character helps us to understand population dynamics, particularly in species that inhabit diverse environments. However, detecting polymorphisms in fossil taxa is challenging due to the fragmentary and incomplete records. Dimorphism, defined as the occurrence of different morphs of a trait within the population of a single species, represents the simplest and most common form of polymorphism. This study focuses on dimorphism instead of polymorphism, which allows for a more streamlined analysis. We use computational simulation experiments to estimate the minimum sample size required to detect bimodal distribution in univariate morphological variables. We describe the morphological diversity of a measured variable (e.g., body mass or skeletal length) as a probability density distribution with specific parameter sets. Subsequently, we simulate the diversity of the measured variable with varying sample sizes and conduct resampling procedures to ensure the robustness. Four key parameters that characterize the probability distribution are identified as having significant influence on the minimum sample size for dimorphism recognition. According to the simulation experiments, a model is built to estimate the minimum sample size for dimorphism recognition based on these parameters. A dataset from extant avian and reptilian species is used to test the model. Furthermore, we calculate a reference for the minimal sample size required for assessing phenotypic dimorphism in fossil avian taxa by applying parameters derived from extant avian species.

Biological variation fuels evolutionary change. Across longer timescales, however, polymorphisms at both the genomic and phenotypic levels often persist longer than would be expected under standard population genetic models such as positive selection or genetic drift. Explaining the maintenance of this variation within populations across long time spans via balancing selection has been a major triumph of theoretical population genetics and ecology. Although persistent polymorphisms can often be traced in fossil lineages over long periods through the rock record, paleobiology has had little to say about either the long-term maintenance of phenotypic variation or its macroevolutionary consequences. I explore the dynamics that occur when persistent polymorphisms maintained over long lineage durations are filtered into descendant lineages during periods of demographic upheaval that occur at speciation. I evaluate these patterns in two lineages: Ectocion, a genus of Eocene mammals, and botryocrinids, a Mississippian cladid crinoid family. Following origination, descendants are less variable than their ancestors. The patterns by which ancestral variation is sorted cannot be distinguished from drift. Maintained and accumulated polymorphisms in highly variable ancestral lineages such as Barycrinus rhombiferus Owen and Shumard, 1852 may fuel radiations as character states are sorted into multiple descendant lineages. Interrogating the conditions under which trans-specific polymorphism is either maintained or lost during periods of demographic and ecological upheaval can explain how population-level processes contribute to the emergent macroevolutionary dynamics that shape the history of life as preserved in the fossil record.

The first size reduction (FSR) in the Reticulofenestra-Gephyrocapsa-Emiliania (RGE) lineage (order Isochrysidales), which occurred in the early Oligocene (~32 Ma), is of great significance for understanding the Lilliput effect that has affected coccolithophore communities from the late Eocene to this day. We conducted a morphologic analysis on the coccoliths of Reticulofenestra species that lived during the late middle Eocene to early Oligocene (~40–31 Ma), using marine sediments from the South Atlantic Ocean. Our data show increasing size and decreasing abundance of the large species during the late Eocene, leading to their disappearance at the FSR, and a concurrent decrease in the size variability of the small- to medium-sized coccoliths whose central opening diameter had become very reduced. Although the cosmopolitan late Paleogene through Neogene size decrease in coccolithophores has been linked to the concomitant long-term decline in global pCO2, we suggest here that the FSR was the result of environmental destabilization caused by the expansion of eutrophic environments following the late Eocene establishment of overturning circulation associated with ice buildup on Antarctica. This study also leads us to propose a hypothetical model that links coccolith morphology of species of the RGE lineage and trophic resources in the upper ocean: the small- to medium-sized, r-selected coccolithophores with smaller coccolith central openings live in nutrient-rich waters where they rely mostly on photosynthesis and little on mixotrophy, whereas the larger, K-selected species with larger coccolith central openings live in oligotrophic waters where they are more dependent on mixotrophy.

Corallite sizes reflect a continuum in the efficacy of photosymbiosis in colonial reef corals, with smaller corallite sizes generally associated with higher autotrophy. Using a large compilation of reef-coral traits and corallite diameters as a proxy, we test here the hypothesis that photosymbiotic efficacy has increased over the evolutionary history of scleractinian corals. To gain a more comprehensive understanding of the evolutionary versus ecological patterns of corallite sizes of reef corals, we used three analytical methods: (1) occurrences-weighted within-bin analyses as a proxy for abundance or ecological dominance to depict ecological patterns; (2) unweighted range-through analyses; and (3) unweighted sampled-in-bin analyses to represent diversity in terms of taxonomic richness, enabling us to trace evolutionary patterns. By-genus, range-through analysis indicates a slightly positive trend of corallite sizes toward the Recent. However, the occurrences-weighted assessment shows a pronounced negative trend of corallite sizes in colonial corals since the Mesozoic. Random walk and directional evolution are both statistically supported to explain this long-term decrease. A driven trend is evolutionarily plausible, giving reef corals a selective advantage in the oligotrophic environments they largely occupy today.

Mammalian species richness is commonly highest at mid- to high elevations, but the accumulation of sediment that might bury and preserve skeletal remains generally occurs at lower elevations, leading to concerns that fossil assemblages are biased toward low-elevation taxa. Here, I use extant mammals as an analogue to test the basin-scale spatial overlap between species ranges and sediment sinks where burial and fossilization would be possible. Sediment sinks are estimated within five topographically complex regions in western North America by identifying areas with both a low slope and a high contributing area of runoff and are compared with point occurrences of mammals compiled from the Global Biodiversity Information Facility (GBIF). I find that, among the test areas, 82–96% of all species have occurrences that overlap with a sediment sink, despite common offsets in the elevations of maximum sink area and maximum species richness: summed across all test areas, 83% of species and 87% of total sediment sink area are found in the lowest 1000 m of the test areas. Although many other factors can act against the fossilization of terrestrial mammals, these results indicate that the spatial distribution of mammal species with respect to sediment sinks should not in itself impose a major bias at the basin scale.

Radiodonta is a clade of stem euarthropods of central importance to our understanding of the evolution of this phylum. Radiodonts include some of the largest early Paleozoic animals; however, little is known about their ontogeny. We present an analysis of molting patterns and ontogeny in the radiodont Stanleycaris based on 265 exceptionally preserved specimens from the mid-Cambrian (Wuliuan) Burgess Shale. Ranging in size from 10 to 83 mm, they constitute the most extensive radiodont ontogenetic series known. Using a novel morphospace approach, we show that putative carcasses and exuviae can be quantitatively distinguished by the particular suites of structures preserved and their modes of preservation. We propose that Stanleycaris, and probably other radiodonts, molted via a suture near the anterior of the trunk. Similar anterior molting strategies, with a suture located at the head–trunk boundary, are shared with some Cambrian euarthropods and are potentially ancestral. Allometric analyses suggest that as Stanleycaris body size increased, the head sclerite and neck became relatively broader, while the trunk and flaps became slightly longer. The eyes developed precociously, indicating an important role of visual processing in juveniles. Finally, we find evidence for an initial anamorphic developmental phase, where segment number increased at least from 11 or 12 up to 17, followed by an epimorphic phase, in which growth continued without segment addition. This is consistent with the hypothesis that finite postembryonic segment addition (hemianamorphosis) is ancestral for arthropods and refines the timing of the origin of this important developmental mode.

The first geographically widespread metazoans form the Avalon assemblage (Ediacaran; 574–560 Ma). These early animals were regularly disturbed by sedimentation events such as ash flows and turbidites, leading to an apparent “resetting” of communities. However, it is not clear how biological legacies—remains or survivors of disturbance events—influenced community ecology in the Avalon. Here, we use spatial point process analysis on 19 Avalon paleocommunities to test whether two forms of biological legacy (fragmentary remains of Fractofusus and survivor fronds) impacted the recolonization dynamics of Avalon paleocommunities. We found that densities of Fractofusus were increased around the Fractofusus fragments, suggesting that they helped to recolonize the post-disturbance substrate, potentially contributing to the Fractofusus dominance found in 8 of the 19 paleocommunities. However, we found no such effects for survivor fronds. Our results suggest that the evolution of height was for long-distance dispersal rather than local recolonization. In modern deep-sea environments, there is a trade-off between local and long-distance dispersal, and our work demonstrates that this differentiation of reproductive strategies had already developed in the early animals of the Avalon.

Species recognition is an essential part of biological and paleontological study. In gastropods, although species are genetic entities, shell morphology continues to be used as the primary source of information to recognize most species. While there are few directly tested cases, variations in conchological characters for modern species are expected to reflect underlying genetic differences that define a biological species, an assumption that is also applied to identify species in the fossil record. Additionally, how consistently shell shape differentiates gastropod species remains poorly understood. In this study, shell shape of Recent and Pliocene–Pleistocene fossil specimens of well-known intertidal gastropods (Littorinidae, periwinkles: †Littorina petricola, Littorina keenae, and the sister-species pair Littorina plena and Littorina scutulata) from the east Pacific was analyzed using landmark-based morphometrics and compared with published molecular data. For the extant species, there is a general positive relationship between shell shape and genetic differences. Discriminant function analyses indicate distantly related species can be more reliably recognized from their shells, while closely related species have a higher error. Fossils and recent specimens were classified with similar consistency. More work is needed to illuminate whether this case applies more widely.

The Mississippi River watershed drains 40% of the continental United States, and the tremendous primary productivity in the adjacent north-central Gulf of Mexico has created one of the most extensive dead zones on Earth. In contrast, smaller watersheds deliver fewer nutrients to the northeastern gulf, and consequently, productivity is limited and hypoxia is uncommon. How has variation in primary productivity, oxygen availability, and sea-surface temperature affected coastal food webs? Here, we investigate environmental controls on the size of molluscan predators and prey in the northern Gulf of Mexico using Holocene death assemblages. Linear mixed models indicate that bivalve size and the frequency of drilling predation are affected by dissolved oxygen concentrations; drilling frequency declines with declining oxygen, whereas bivalve size increases. In contrast, sea-surface temperature is positively associated with the size of molluscan predators and prey. Net primary productivity contributes relatively little to predator or prey size, and predator-to-prey size ratios do not vary consistently with environmental conditions across the northern gulf. Larger bivalves in areas of oxygen limitation may be due to decreased predation pressure and, consequently, greater prey longevity. The larger size of bivalves and predatory gastropods in warmer waters may reflect enhanced growth under these conditions, provided dissolved oxygen concentrations exceed a minimum threshold. Holocene death assemblages can be used to test long-standing hypotheses regarding environmental controls on predator−prey body-size distributions through geologic time and provide baselines for assessing the ongoing effects of anthropogenic eutrophication and warming on coastal food webs.

Morphological characters are central to phylogenetic inference, especially for fossil taxa for which genomic data are unavailable. While Bayesian methods have gained popularity in recent years, they typically assume characters evolve independently, despite known correlations among characters. Here, we assess the impact of character correlation and evolutionary rate heterogeneity on Bayesian phylogenetic inference using extensive simulations of binary characters evolving under independent and correlated models. We find that Bayesian inference assuming character independence accurately recovers tree topologies even when characters are strongly correlated or evolve under heterogeneous rates. However, branch lengths or clock rates tend to be underestimated, particularly under extreme rate heterogeneity. These biases are partially corrected using models that integrate over character-state heterogeneity. Our results demonstrate that Bayesian methods are robust to violations of character independence in topological inference, supporting their continued use in morphological phylogenetics.

The Late Triassic conodont species Mockina ex gr. carinata and Mockina ex gr. englandi were exceptionally prevalent among the marine fauna of the Panthalassan realm from the middle Norian through to the Rhaetian. Leading into the complete extinction of conodonts near the Triassic/Jurassic boundary, a significant turnover event occurred in conodont fauna across the Norian/Rhaetian boundary (NRB), with the pectiniform elements of common Rhaetian genera from Tethys exhibiting minimal or absent platforms. This intergeneric trend of platform reduction is not as evident in Panthalassa, where these genera are very rare, but morphometric analyses of M. ex gr. carinata and M. ex gr. englandi specimens from across the Canadian Cordillera demonstrate that comparable shifts in morphology occurred intraspecifically in Panthalassa across the NRB, confirming the global extent of these trends. Pectiniform elements of M. ex gr. carinata display a sequential reduction of platform width from the middle Norian to late Norian to Rhaetian, whereas pectiniform elements of M. ex gr. englandi display a reduction of platform width only from the late Norian to Rhaetian. Specimens of both species that have a mid-platform length to breadth ratio greater than 3:1 are restricted to the Rhaetian. Specimens from the Kennecott Point section on Haida Gwaii, British Columbia, demonstrate that this morphological shift occurred somewhat later than other biostratigraphic proxies for the NRB. The global trend of platform width reduction in many conodont pectiniform elements may reflect a change in primary diet away from hard food sources, perhaps suggesting some degree of carbonate biomineralization suppression beginning around the NRB. This interpretation would support CO2 outgassing as the causal mechanism of the environmental disturbance at the NRB and identify the NRB as a significant turning point for Late Triassic ecosystems, marking the beginning of a protracted, multiphase end-Triassic mass extinction.

Immature specimens of the Late Cretaceous pterosaur Pteranodon were identified using three size-independent criteria: (1) fusion of various cranial and postcranial elements; (2) degree of epiphyseal ossification; and (3) bone grain or degree of ossification of limb-bone shafts. Immature individuals make up 15% of available specimens of Pteranodon and do not differ significantly in size from mature individuals. This and the extensive fusion of the mature skeleton suggest that Pteranodon had determinate growth. The bone of limb-bone shafts of immature individuals is fibro-lamellar bone, which suggests that they grew rapidly to adult size. The size-independent criteria can also be used to identify immature and mature individuals of other pterosaur taxa, and other large pterodactyloids also probably exhibited rapid determinate growth.

The evolution of the mandible in mammalian carnivores is influenced by ecological demands that have changed over their phylogenetic history. We combined geometric morphometrics and biomechanical analysis (including beam analysis and finite element analysis, or FEA) to assess the interaction between form and function as the mandible has adapted independently to carnivorous diets in therian clades including Metatheria, Mesonychia, “Creodonta,” and Carnivoramorpha. Our goal was to determine the relative contributions of mechanical advantage, mandibular force, and mandibular resistance to bending and torsion, to the evolution of mandibular shape in these groups, as well as whether they produce differential rates of shape evolution in the horizontal and ascending rami, which respectively are the tooth-bearing and muscle-loading parts of the structure.

We found that the ascending ramus has higher rates of evolution than the horizontal ramus, making it the more rapidly evolvable portion of the mandible. Statistical evaluation supports this interpretation, as mechanical advantage and resistance to force explain more of the variance in shape than do the beam mechanic estimates that are heavily influenced by the mandibular body. Regression analysis shows that the evolution of specialized carnivory was associated with stronger mandibles in which mandibular shape changed by shortening and thickening of the mandible, increasing the areas of muscle attachment, and increasing the carnassial blade length. Principal component analysis of mandibular shape shows that different clades in Theria have been able to fill out similar specialized carnivorous niches with similar functional metrics despite having different mandibular morphologies.

Numerous, high-quality reproduction-related oviraptorosaur fossils have been described. However, oviraptorosaur-style nests are unknown among extant animals, and their curious construction makes nesting behavior difficult to interpret. Experiments were undertaken to better understand oviraptorosaur nesting strategies. A surrogate was constructed and placed atop mock-oviraptorosaur nests built from sand and 36 infertile emu eggs (as Macroolithus approximations) arranged according to the most current nest reconstructions. Thermometers, placed within each egg and throughout the experimental area, recorded energy flow from the surrogate dinosaur into the nesting microenvironment. One experiment examined a basic open nest warmed from above; the second, a fully buried clutch warmed from above; and the third, a nest open like the first but with heating elements (representing hindlimbs) extending down into the nest. It was found that egg temperatures in each scenario surpassed ambient temperatures without requiring excessive energy input. Final clutch temperatures were below most avian values, closer to crocodilian incubation, but are likely conservative, considering experimental parameters. These results may support the idea that an oviraptorosaur could use adult-generated energy to warm a clutch above ambient conditions. Additionally, egg tiers would be warmer and more uniform in temperature if heated by elements within the nest, such as hindlimbs, instead of solely from above. Results from the second experiment indicate that an endothermic adult could possibly warm a clutch fully buried beneath itself despite a barrier. Although not likely a behavior exhibited by oviraptorosaurs, such results suggest an important evolutionary step bridging guarded subterranean eggs and contact-incubated subaerial eggs.

Body size has a long history of study in paleobiology and underlies many important phenomena in macroevolution. Body-size patterns in the fossil record are often examined by utilizing size data alone, which hinders our ability to describe the biological meaning behind size change on macroevolutionary timescales. Without data reflecting the biological and geologic factors that drive size change, we cannot assess its mechanistic underpinnings.

Existing frameworks for studying ontogeny and phylogeny can remedy this problem, particularly the classic age–size–“shape” space originally developed for studies of heterochrony. When evaluated based on metrics for age, size, and phenotype in populations, proposed mechanisms for size change can be outlined theoretically and tested empirically in the record. Using this framework, we can compare ontogenetic trajectories within and between species and determine how changes in size emerge. Here, we outline ontogenetic mechanisms for evolutionary size change, such as heterochrony, as well as how geologic factors can drive apparent, non-biological size change (e.g., taphonomic size sorting).

To demonstrate the utility of this framework in actual paleobiological problems, we apply it to the Lilliput effect, a compelling and widely documented pattern of size decrease during extinction events. However, little is known about the mechanisms underlying this pattern. We provide a brief history of the Lilliput effect and refine its definition in a framework that can be mechanistically tested. Processes that likely produce Lilliput effects include allometric and sequence repatterning (including heterochrony) and evolutionary size-selective sorting. We describe these mechanisms and highlight relevant examples of the Lilliput effect for which feasible empirical tests are possible.

Living chondrichthyans comprise only a fraction of their historical diversity represented in the fossil record, but together they provide insights into the evolution of this ancient clade. Using a theoretical morphology approach, we sought the evolutionary drivers of mandible morphology, a key factor in the feeding ecology of the clade, across their more than 400 million year evolutionary history. Using an empirical sample of 122 extant and 95 extinct species across 35 orders, we created a theoretical morphospace that encompasses, and expands beyond, sampled variation. We sampled morphologies from this theoretical morphospace and subjected them to biomechanical analysis of speed and strength, deriving landscapes of functional performance and optimality into which we projected a phylomorphospace. We examined how the optimality landscape has been navigated by chondrichthyan evolution and how it has been occupied by taxa characterized according to habitat and trophic level. The empirical chondrichthyan morphospace occupation was dispersed from the trade-off optimality peaks. Early chondrichthyans occupy morphospace characterized by narrow, curved jaws before expanding to more robust morphologies through time. This move toward robust morphologies does not follow the most optimal trade-off morphologies, instead avoiding areas that are least optimal. Deep-water species occupy the largest morphospace area, while higher trophic level species stay closer to the trade-off optimality peaks. Our study shows that chondrichthyans, rather than being living fossils, have explored increasingly specialized jaw morphologies, likely related to shifts in ecology such as increased numbers of durophagous taxa, as opposed to a more generalist optimization of component biomechanical constraints.

In whales, extreme modifications to the ancestral mammalian feeding apparatus facilitate novel modes of aquatic feeding. These modifications manifest in morphological diversity across a suite of characters, including the mandibular symphysis. Cetaceans span a range of symphyseal morphologies, with one lineage (crown mysticetes) evolving a highly mobile condition unique among mammals. Here, we use phylogenetic comparative methods to examine the evolution of symphyseal fusion and elongation across 206 extant and fossil cetacean taxa. Ancestral state reconstructions corroborate observations from the fossil record that suggest the ancestral condition for Cetacea was a fused, moderately elongated symphysis. Shifts in symphyseal morphology coincided with ocean restructuring and diversification of feeding modes. Evolutionary rates peaked in the middle–late Eocene and at the Eocene/Oligocene boundary as whales evolved shorter, unfused symphyses. During the Eocene, ankylosed mandibles became less common with the appearance of increasingly pelagic whales. Mysticetes evolved decoupled, highly mobile mandibles near the Eocene/Oligocene boundary. Several odontocete lineages underwent a trait reversal and converged on fully fused, elongated mandibles in the Miocene. Analyses evaluating the influence of ecological variables indicate strong correlations in feeding strategy, dentition, and prey type. The loss of prey-processing behavior and changes to masticatory loading regimes may explain concurrent trends in symphyseal morphology and tooth simplification. We suggest that the functional and morphological diversity of the symphysis in whales is a consequence of aquatic feeding imposing different mechanical constraints than those associated with feeding on land.