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Morphogenesis-related gene-expression profile in porcine oocytes before and after in vitro maturation

Published online by Cambridge University Press:  03 July 2017

Joanna Budna
Affiliation:
Department of Histology and Embryology, Department of Anatomy, Poznań University of Medical Sciences, 6 Święcickiego St., 60–781 Poznań, Poland.
Adrian Chachuła
Affiliation:
Department of Histology and Embryology, Poznań University of Medical Sciences, Poznań, Poland
Dominika Kaźmierczak
Affiliation:
Institute of Veterinary Sciences, Poznań University of Life Sciences, Poznań, Poland
Marta Rybska
Affiliation:
Institute of Veterinary Sciences, Poznań University of Life Sciences, Poznań, Poland
Sylwia Ciesiółka
Affiliation:
Department of Histology and Embryology, Poznań University of Medical Sciences, Poznań, Poland
Artur Bryja
Affiliation:
Department of Anatomy, Poznań University of Medical Sciences, Poznań, Poland
Wiesława Kranc
Affiliation:
Department of Anatomy, Poznań University of Medical Sciences, Poznań, Poland
Sylwia Borys
Affiliation:
Department of Anatomy, Poznań University of Medical Sciences, Poznań, Poland
Agnieszka Żok
Affiliation:
Department of Social Sciences, Poznań University of Medical Sciences, Poznań, Poland
Dorota Bukowska
Affiliation:
Institute of Veterinary Sciences, Poznań University of Life Sciences, Poznań, Poland
Paweł Antosik
Affiliation:
Institute of Veterinary Sciences, Poznań University of Life Sciences, Poznań, Poland
Małgorzata Bruska
Affiliation:
Department of Anatomy, Poznań University of Medical Sciences, Poznań, Poland
Klaus P. Brüssow
Affiliation:
Institute of Veterinary Sciences, Poznań University of Life Sciences, Poznań, Poland
Michał Nowicki
Affiliation:
Department of Histology and Embryology, Poznań University of Medical Sciences, Poznań, Poland
Maciej Zabel
Affiliation:
Department of Histology and Embryology, Poznań University of Medical Sciences, Poznań, Poland Department of Histology and Embryology, Wroclaw Medical University, Wroclaw, Poland
Bartosz Kempisty*
Affiliation:
Department of Histology and Embryology, Department of Anatomy, Poznań University of Medical Sciences, 6 Święcickiego St., 60–781 Poznań, Poland. Department of Histology and Embryology, Poznań University of Medical Sciences, Poznań, Poland Department of Anatomy, Poznań University of Medical Sciences, Poznań, Poland
*
All correspondence to: Bartosz Kempisty. Department of Histology and Embryology, Department of Anatomy, Poznań University of Medical Sciences, 6 Święcickiego St., 60–781 Poznań, Poland. Tel:. +48 61 8546418. Fax:+48 61 8546440, E-mail: bkempisty@ump.edu.pl
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Summary

Mammalian oocyte maturation is achieved when oocytes reach metaphase II (MII) stage, and accumulate mRNA and proteins in the cytoplasm following fertilization. It has been shown that oocytes investigated before and after in vitro maturation (IVM) differ significantly in transcriptomic and proteomic profiles. Additionally, folliculogenesis and oogenesis is accompanied by morphogenetic changes, which significantly influence further zygote formation and embryo growth. This study aimed to determine new transcriptomic markers of porcine oocyte morphogenesis that are associated with cell maturation competence. An Affymetrix microarray assay was performed on an RNA template isolated from porcine oocytes before (n = 150) and after (n = 150) IVM. The brilliant cresyl blue (BCB) staining test was used for identification of cells with the highest developmental capacity. DAVID (Database for Annotation, Visualization, and Integrated Discovery) software was used for the extraction of the genes belonging to a cell morphogenesis Gene Ontology group. The control group consisted of freshly isolated oocytes. In total, 12,000 different transcripts were analysed, from which 379 genes were downregulated and 40 were upregulated in oocytes following IVM. We found five genes, SOX9, MAP1B, DAB2, FN1, and CXCL12, that were significantly upregulated in oocytes after IVM (in vitro group) compared with oocytes analysed before IVM (in vivo group). In conclusion, we found new transcriptomic markers of oocyte morphogenesis, which may be also recognized as significant mediators of cellular maturation capacity in pigs. Genes SOX9, MAP1B, DAB2, FN1, and CXCL12 may be involved in the regulation of the MII stage oocyte formation and several other processes that are crucial for porcine reproductive competence.

Information

Type
Research Article
Copyright
Copyright © Cambridge University Press 2017 
Figure 0

Table 1 Oligonucleotide sequences used for RT-qPCR analysis

Figure 1

Figure 1 Volcano plots of total gene expression profile after in vitro maturation. Y-axis indicates –log10 P-value corrected by false discovery rate (FDR) while log2 fold changes were imposed on the x-axis. Each dot represents a single gene from microarray-normalized dataset. Orange dotted cut-off lines were established using the following parameters fold > | 2 | and adjusted P-value < 0.05. Genes above the cut-off are considered as differentially expressed and marked by turquoise colour. Total numbers of genes in which expression was upregulated or downregulated are written in the corner of the graph.

Figure 2

Table 2 Top 10 genes with the highest and the lowest fold changes after oocyte in vitro maturation. Fold changes and corrected P-values of differentially expressed genes are shown

Figure 3

Figure 2 Heat map representation of differentially expressed genes belonging to the category ‘cell morphogenesis involved in differentiation’ from GO.BP database. The three columns in each group represent biological replicates. Arbitrary signal intensity acquired from microarray analysis is visually represented (green – higher; red – lower expression). Log2 signal intensity values were resized to Row Z-score scale for any single gene (from −1.5 – lowest expression to +1.5 – highest expression).

Figure 4

Table 3 Top five GO categories formed by genes differentially expressed belonging to the ‘cell morphogenesis involved in differentiation’ ontology group. GO categories were generated using STRING software. GO ID (pathway ID), GO term description (pathway description), and number of genes belonging to an appropriate category (count in gene set) are shown

Figure 5

Table 4 Validation of microarray data by RT-qPCR for five genes chosen. Fold changes with their respective P-values for microarray assay and RT-qPCR are presented