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Molecular characterisation and expression profiles of an odorant-binding proteins gene (FoccOBP9) from Frankliniella occidentalis

Published online by Cambridge University Press:  09 January 2025

Zhike Zhang*
Affiliation:
Ningxia Academy of Agriculture and Forestry Sciences, Institute of Plant Protection, Yinchuan, China
*
Corresponding author: Zhike Zhang; Email: zhangzhike98@163.com
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Abstract

Insect odorant-binding proteins (OBPs) are the key proteins in insect olfactory perception and play an important role in the perception and discrimination of insects. Frankliniella occidentalis is a polyphagous pest and seriously harms the quality and yield of fruits, flowers and crops worldwide. Therefore, the discovery of OBPs has greatly improved the understanding of behavioural response that mediates the chemoreception of F. occidentalis. To identify the OBP gene of F. occidentalis and its sequence and expression, rapid amplification cDNA ends (RACE) and qRT-PCR reaction system were performed. The results showed that the sequence of FoccOBP9 gene was 846 bp and the reading frame was 558 bp, encoding 185 amino acid residues, a 3′ non-coding region of 195 bp and a 5′ non-coding region of 93 bp.The molecular weight of the protein was about 20.08 kDa, and the isoelectric point was 8.89. FoccOBP9 was similar to AtumGOBP and CnipOBP2 (30%), followed by BdorGOBP, DficGOBP, DsuzGOBP, AalbOBP38, CmarOBP6 and SexiOBP. Phylogenetic analysis of the FoccOBP9 demonstrated that the FoccOBP9 had a relatively close evolutionary relationship with SgreOBP1, AtumGOBP, HeleOBP3, CbowOBP17, CnipOBP2 and CpalOBP2. The prediction of secondary structure showed that FoccOBP9 protein contained 135 amino acid residues forming α-helix, 91 amino acid residues forming β-sheets and 24 amino acid residues forming β-turning. However, three-dimensional structure prediction showed that the FoccOBP9 protein skeleton was composed of six α-helices and the loops connecting these helices. Dynamic observation of the three-dimensional structure revealed that five α-helices (α1, α2, α4, α5, α6) were found in the structure. The expression profiles analysis revealed that FoccOBP9 are highly abundant in antenna significantly, followed by the head and belly, and almost no expression in the chest and foot. Therefore, the identification and analysis of OBP may be useful for monitoring and limiting the damage of F. occidentalis.

Information

Type
Research Paper
Copyright
© The Author(s), 2025. Published by Cambridge University Press
Figure 0

Table 1. Primer sequences use for amplification of cDNA

Figure 1

Figure 1. Nucleotide and deduced amino acid sequence of odorant-binding protein gene of FoccOBP9. (Termination codons are indicated by an asterisk. Six conserved cysteine sites are marked with boxes.)

Figure 2

Figure 2. Predicted hydrophobicity profiles for the deduced amino acid sequences of FoccOBP9. Hydrophobicity index values are plotted against the amino acid residues using the method of Kyte and Doolittle (1982). Positive values indicate hydrophobicity and negative values indicate hydrophilicity. A,B,C,D,E: five predicted hydrophobic domains.

Figure 3

Table 2. The consistency result between homologous protein and FoccOBP9

Figure 4

Figure 3. Alignment of FoccOBP9 with other order insect OBP. The conserved amino acids are highlighted under yellow. The other insect species are Drosophila willistoni (Diptera), Bactrocera dorsalis (Diptera), Ooceraea biroi (Hymenoptera), Neodiprion lecontei (Hymenoptera), Chrysopa pallens (Neuroptera), Chrysoperla nipponensis (Neuroptera), Nicrophorus vespilloides (Coleoptera), Rhyzopertha dominica (Coleoptera), Spodoptera exigua (Lepidoptera). Gene Bank accession numbers for all OBPs genes are DwilOBP, XP_002063852.1; BdorOBP, XP_011209038.1; ObiOBP, XP_011346593.1; NlecOBP, XP_015512408.1; CpalOBP2, AKW47195.1; CnipOBP2, AKW47223.1; NvesOBP, XP_017774856.1; RdomOBP3, AIX97144.1;SexiOBP, ADY17883.1.

Figure 5

Figure 4. FoccOBP9 speculated protein phylogenetic tree based on N-J method. The length of the branch represents the genetic distance, the number on the branch is the confidence of the repeated calculation at ‘Bootstrap’ of 1000. The right is the abbreviation for the name of the insect species, protein name, accession number and the purpose of the insect acronym. Figure system tree insect head abbreviations were: Di (Diptera), Hy (Hymenoptera), Co (Coleoptera), Ho (Homoptera), Ne (Neuroptera), Se (Strongylida), Th (Thysanoptera), He (Hemiptera), Or (Orthoptera), Le (Lepidoptera). The species abbreviations are: Aalb (Aedes albopictus), Acon (Argyresthia conjugella), Apis (Acyrthosiphon pisum), Atum (Aethina tumida), Bdor (Bactrocera dorsalis), Bimp (Bombus impatiens), Blat (Bactrocera latifrons), Btab (Bemisia tabaci), Bter (Bombus terrestris), Cbow (Colaphellus bowringi), Ccin (Cephus cinctus), Ccos (Cyphomyrmex costatus), Cmar (Clunio marinus), Cmed (Cnaphalocrocis medinalis), Cnip (Chrysoperla nipponensis), Cpal (Chrysopa pallens), Cpal (Culex pipiens pallens), Cqui (Culex quinquefasciatus), Csty (Calliphora stygia), Cubi (Chinavia ubica), Dana (Drosophila ananassae), Danv (Drosophila navojoa), Dari (Drosophila arizonae), Dbip (Drosophila bipectinata), Dbir (Drosophila biarmipes), Dbus (Drosophila melanogaster), Dcit (Diaphorina citri), Dele (Drosophila elegans), Dere (Drosophila erecta), Deug (Drosophila eugracilis), Dfic (Drosophila ficusphila), Dhyd (Drosophila hydei), Dkik (Drosophila kikkawai), Dmel (Drosophila melanogaster), Dmir (Drosophila miranda), Dmoj (Drosophila mojavensis), Dnov (Dufourea novaeangliae), Dobs (Drosophila obscura), Dper (Drosophila persimilis), Dqun (Dinoponera quadriceps), Drho (Drosophila rhopaloa), Dser (Drosophila serrata), Dsim (Drosophila simulans), Dtak (Drosophila takahashii), Dvir (Drosophila virilis), Dwil (Drosophila willistoni), Dyak (Drosophila yubaak), Emex (Eufriesea mexicana), Focc (Frankliniella occidentalis), Hele (Hylamorpha elegans), Hsal (Harpegnathos saltator), Lory (Lissorhoptrus oryzophilus), Lstr (Laodelphax striatella), Mdom (Musca domestica), Mpul (Meteorus pulchricornis), Nlec (Neodiprion lecontei), Nlug (Nilaparvata lugens), Nves (Nicrophorus vespilloides), Oabi (Orussus abietinus), Obir (Ooceraea biroi), Rfer (Rhynchophorus ferrugineus), Sexi (Spodoptera exigua), Sgre (Schistocerca gregaria), Tbra (Triatoma brasiliensis), Tcor (Trachymyrmex cornetzi), Veme (Vollenhovia emeryi), Waur (Wasmannia auropunctata), Zcuc (Zeugodacus cucurbitae), Ztau (Zeugodacus tau).

Figure 6

Figure 5. Amino acid composition of FoccOBP9.

Figure 7

Figure 6. Predicted secondary structure of FoccOBP9.

Figure 8

Figure 7. Predicted three-dimensional model of FoccOBP9. 3D structure of the FoccOBP9 from F. occidentalis. Six α-helices are represented in different colours such as N-terminus, α1: blue, α2: dark blue, α3: green, α4: sea green, α5: dark green, α6: brown and C-terminus.

Figure 9

Figure 8. The relative expression level of FoccOBP9 in F. occidentalis different developmental stages. Ny-1: the first instar nymph; Ny-2: the second instar nymph; Pu: pupae; Fe-1, Fe-5, Fe-10, Fe-15 means 1-, 5-, 10-, 15-day-old adult female; Ma-1, Ma-5, Ma-10, Ma-15 means 1-, 5-, 10-, 15-day-old adult male.

Figure 10

Figure 9. The relative expression level of FoccOBP9 in different adult tissues of F. occidentalis.