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Predictive mapping of wild carrot (Daucus carota ssp. carota) in central Oregon

Published online by Cambridge University Press:  28 October 2026

Pete A. Berry*
Affiliation:
Crop and Soil Science, Oregon State University , Corvallis, USA
Ray Brunner
Affiliation:
Institute for Natural Resources, Portland State University, USA
John Spring
Affiliation:
Central Oregon Seed, Inc., USA
Victor Ribeiro
Affiliation:
Crop and Soil Science, Oregon State University, USA
Carol Mallory-Smtih
Affiliation:
Crop and Soil Science, Oregon State University, USA
Emilie Henderson
Affiliation:
Institute for Natural Resources, Oregon Agricultural College: Oregon State University, USA
*
Corresponding author: Pete A. Berry; Email: pete.berry@oregonstate.edu
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Abstract

This study addresses the distribution of wild carrot [Daucus carota (L.) ssp. carota], in the hybrid carrot seed [Daucus carota (L.) ssp. sativus (Hoffm.) Arcang.; hereafter Daucus carota] production region of central Oregon. Field surveys conducted in 2022 and 2023 in collaboration with regional partners provided observational data to train a relative risk model (random forest). Integrating 75 known D. carota occurrences, more than 2,000 known absences, and 1,000 randomly generated background points with data on topography, climate, soil, road proximity, and land cover, the model effectively distinguished potential D. carota establishment sites, achieving a high predictive accuracy (AUC = 0.911) against a background dataset. We identified four model-probability cutoff values (using precision–recall F-measure, varying alpha parameter), yielding five risk categories, from very low to very high risk. The moderate to very high risk categories highlight priority areas for monitoring and management to mitigate the risk of D. carota establishment, a concern especially relevant for local hybrid carrot seed production given the potential for cross-pollination and genetic contamination. The resulting risk maps provide a spatially explicit framework for identifying environmentally suitable habitats and potential invasion corridors, supporting early detection and rapid response efforts. By focusing surveillance and management activities within high-risk areas, stakeholders can improve monitoring efficiency, reduce the likelihood of D. carota establishment and spread, and help maintain the genetic integrity of central Oregon’s hybrid carrot seed production system.

Information

Type
Research Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2026. Published by Cambridge University Press on behalf of Weed Science Society of America
Figure 0

Figure 1. Study area used for development of the Daucus carota species distribution model (SDM) in central Oregon (15,425 km2), shown within the state of Oregon (inset). Red circles represent confirmed D. carota occurrence locations collected from field surveys and partner observations between 2012 and 2023. Gray crosses indicate field-verified absence locations, and gray circles represent randomly generated background (pseudo-absence) points used during model development. Blue lines denote major rivers and streams. Occurrence, absence, and background points were combined with environmental and landscape variables to develop the habitat suitability model for D. carota across the study region.

Figure 1

Table 1. Environmental and landscape predictor variables included in the final random forest species distribution model (SDM) for Daucus carota.Table 1 long description.

Figure 2

Figure 2. Variable importance metrics for Daucus carota establishment risk models. Mean decrease Gini and mean decrease accuracy are rescaled as “proportion of total index” for display. These metrics are extracted from models that were used solely for importance calculations (not mapping). Minor differences are possible between these models and the ones used for mapping due to the random processes within the random forest model. Abbreviations on the x axis represent the environmental and landscape predictor variables: a07_be30, elevation; a10_east30, aspect eastness; a25_cpl30, planimetric curvature; a38_dtwc, vertical depth to the nearest stream channel; vpdmax_234, maximum vapor pressure deficit; ppt_234, precipitation; SR_B7_spr2123, spring Landsat Band 7 surface reflectance; NBR_spr2123, spring normalized burn ratio; G_sum2123, summer Tasseled Cap Greenness; NDVI_sum2123, summer normalized difference vegetation index; EVI_sum2123, summer enhanced vegetation index; RoadDist, horizontal distance from a road; and HabitatMap2, simplified Oregon habitat classification.

Figure 3

Figure 3. Area under the receiver-operator curve (AUC) generated from out-of-box predictions of the final random forest species distribution model (SDM) for Daucus carota. The AUC curve plots the true positive rate (sensitivity) against the false positive rate (1 − specificity) across the range of predicted probabilities. Blue points indicate probability cutoff values selected using precision–recall F-measure optimization at α = 0.05, 0.25, 0.50, and 0.75. These thresholds were subsequently used to define the categorical risk classes used in habitat suitability mapping.

Figure 4

Table 2. Accuracy statistics associated with the probability thresholds used to classify continuous model predictions into categorical risk classesaTable 2 long description.

Figure 5

Table 3. Spatial extent of predicted Daucus carota habitat suitability classes within the central Oregon study areaaTable 3 long description.

Figure 6

Figure 4. Habitat suitability map for Daucus carota within the central Oregon study area derived from the final random forest species distribution model (SDM). Continuous model predictions were classified into five categorical risk classes (very low, low, moderate, high, and very high) using probability thresholds derived from precision–recall F-measure optimization. Insets (A–C) provide enlarged views of representative portions of the study area to illustrate the spatial distribution and resolution of predicted risk categories. The black outline represents the model boundary used for habitat suitability mapping.