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Gene microarray integrated with iTRAQ-based proteomics for the discovery of NLRP3 in LPS-induced inflammatory response of bovine mammary epithelial cells

Published online by Cambridge University Press:  14 November 2019

Yu Sun
Affiliation:
College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, China College of Animal Science and Veterinary Medicine, Henan Agricultural University, Zhengzhou, Henan, China
Lian Li*
Affiliation:
College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, China
Chengmin Li
Affiliation:
College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, China
Genlin Wang
Affiliation:
College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, China
Guangdong Xing*
Affiliation:
Institute of Animal Science, Jiangsu Academy of Agricultural Sciences, Nanjing, China
*
Author for correspondence: Lian Li, Email: lilian@njau.edu.cn; Guangdong Xing, Email: xing_gd@jaas.ac.cn
Author for correspondence: Lian Li, Email: lilian@njau.edu.cn; Guangdong Xing, Email: xing_gd@jaas.ac.cn
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Abstract

Mastitis, a major infectious disease in dairy cows, is characterized by an inflammatory response to pathogens such as Escherichia coli and Staphylococcus aureus. To better understand the immune and inflammatory response of the mammary gland, we stimulated bovine mammary gland epithelial cells (BMECs) with E. coli-derived lipopolysaccharide (LPS). Using transcriptomic and proteomic analyses, we identified 1019 differentially expressed genes (DEGs, fold change ≥2 and P-value < 0.05) and 340 differentially expressed proteins (DEPs, fold change ≥1.3 and P-value < 0.05), of which 536 genes and 162 proteins were upregulated and 483 genes and 178 proteins were downregulated following exposure to LPS. These differentially expressed genes were associated with 172 biological processes; 15 Gene Ontology terms associated with response to stimulus, 4 associated with immune processes, and 3 associated with inflammatory processes. The DEPs were associated with 51 biological processes; 2 Gene Ontology terms associated with response to stimulus, 1 associated with immune processes, and 2 associated with inflammatory processes. Meanwhile, several pathways involved in mammary inflammation, such as Toll-like receptor, NF-κB, and NOD-like receptor signaling pathways were also represented. NLRP3 depletion significantly inhibited the expression of IL-1β and PTGS2 by blocking caspase-1 activity in LPS-induced BMECs. These results suggest that NLR signaling pathways works in coordination with TLR4/NF-κB signaling pathways via NLRP3-inflammasome activation and pro-inflammatory cytokine secretion in LPS-induced mastitis. The study highlights the function of NLRP3 in an inflammatory microenvironment, making NLRP3 a promising therapeutic target in Escherichia coli mastitis.

Information

Type
Research Article
Copyright
Copyright © Hannah Dairy Research Foundation 2019
Figure 0

Fig. 1. Comparison of RT-PCR findings to microarray results by fold-change of 7 select genes. The fold-changes upon LPS stimulation for 7 representative BMEC DEGs are shown, as determined by microarray analysis (blue) and verified by RT-PCR (red). The real-time data represent averages of triplicates and were normalized to GAPDH.

Figure 1

Fig. 2. Comparison of western blotting findings to iTRAQ results by fold-change of 2 select proteins. (a) The protein expression of NLRP3 and PTSG2 (COX-2) were analyzed by western blotting with specific antibodies. β-actin was used as a control. The values presented are the means ± sem of three independent experiments. (b) The fold-changes upon LPS stimulation for 2 representative BMEC DEPs are shown, as determined by iTRAQ analysis (blue) and verified by western blotting (red). *P < 0.05 and **P < 0.01 are significantly different from the control group.

Figure 2

Fig. 3. KEGG analysis of the differentially expressed genes (P < 0.01, gene number >10) and proteins (P < 0.05, gene number >5). (a) The KEGG analysis results showed that the most enriched pathways included chemokine signaling pathway, TNF signaling pathway, NOD-like receptor signaling pathway, Toll-like receptor signaling pathway, NF-κB signaling pathway, Inflammatory mediator regulation of TRP channels, etc. (b) The KEGG analysis results showed that the most enriched pathways included ECM-receptor interaction, Focal adhesion, Ribosome, PI3K-Akt signaling pathway, etc.

Figure 3

Fig. 4. Effects of LPS on proinflammatory cytokines production and apoptosis. (a)The levels of TNF-α, IL-1β and IL-6 markedly increased. (b) After BMEC were treated with 10 µg/ml of LPS for 12 h, the relative number of cells undergoing apoptosis was determined by flow cytometry after annexin V/propidium iodide (PI) staining. *P < 0.05 and **P < 0.01 are significantly different from the control group.

Figure 4

Fig. 5. Effects of silencing NLRP3 on proinflammatory cytokines expression in BMECs. Cells with stable silencing of NLRP3 with siRNA (siControl and siNLRP3) and treatment with LPS. *P < 0.05 and **P < 0.01 are significantly different from the control group.

Figure 5

Fig. 6. Proposed mechanisms of LPS-induced inflammatory response in bovine mammary epithelial cells. Differently expression genes and proteins were involved in several signaling pathways associated with inflammatory signaling pathways. Depletion of NLRP3 partially inhibited inflammatory cytokine secretion. Consistent with previous studies, we found that NLRP3 depletion-inhibited inflammatory cytokine secretion was mediated by Pro-caspase-1. Meanwhile, the increased expression of IL-1β inhibited the PTGS3(COX-2) expression activity. These results suggested that NLRs signaling pathways works in coordination with TLR4/NF-κB signaling pathways via NLRP3-inflammasome activation and pro-inflammatory cytokine secretion in LPS-induced mastitis.

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