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Epigenetic modifications at DMRs of imprinting genes in sperm of type 2 diabetic men

Published online by Cambridge University Press:  23 May 2022

Maryam Jazayeri
Affiliation:
Department of Reproductive Biology, Faculty of Basic Sciences and Advanced Medical Technologies, Royan Institute, ACECR, Tehran, Iran Department of Embryology, Reproductive Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACER, Tehran, Iran
Poopak Eftekhari-Yazdi
Affiliation:
Department of Embryology, Reproductive Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACER, Tehran, Iran
Mohammad Ali Sadighi Gilani
Affiliation:
Department of Andrology, Reproductive Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACECR, Tehran, Iran
Mohsen Sharafi
Affiliation:
Department of Embryology, Reproductive Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACER, Tehran, Iran Department of Poultry Sciences, Faculty of Agriculture, Tarbiat Modares University, Tehran, Iran
Abdolhossein Shahverdi*
Affiliation:
Department of Embryology, Reproductive Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACER, Tehran, Iran
*
Authors for correspondence: Abdolhossein Shahverdi. P.O. Box: 16635-148, Department of Embryology, Reproductive Biomedicine Research Center, Royan Institute for Reproductive Biomedicine, ACECR, Tehran, Iran. E-mail: shahverdi@royaninstitute.org
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Summary

High rates of infertility in type 2 diabetic (T2DM) men have led to attempts to understand the mechanisms involved in this process. This condition can be investigated from at least two aspects, namely sperm quality indices and epigenetic alterations. Epigenetics science encompasses the phenomena that can lead to inherited changes independently of the genetics. This study has been performed to test the hypothesis of the relationship between T2DM and the epigenetic profile of the sperm, as well as sperm quality indices. This research included 42 individuals referred to the infertility clinic of Royan Institute, Iran in 2019–2021. The study subjects were assigned to three groups: normozoospermic non-diabetic (control), normozoospermic diabetic (DN) and non-normozoospermic diabetic (D.Non-N). Sperm DNA fragmentation was evaluated using the sperm chromatin structure assay technique. The global methylation level was examined using 5-methyl cytosine antibody and the methylation status in differentially methylated regions of H19, MEST, and SNRPN was assessed using the methylation-sensitive high-resolution melting technique. The results showed that the sperm global methylation in spermatozoa of D.Non-N group was significantly reduced compared with the other two groups (P < 0.05). The MEST and H19 genes were hypomethylated in the spermatozoa of D.Non-N individuals, but the difference level was not significant for MEST. The SNRPN gene was significantly hypermethylated in these individuals (P < 0.05). The results of this study suggest that T2DM alters the methylation profile and epigenetic programming in spermatozoa of humans and that these methylation changes may ultimately influence the fertility status of men with diabetes.

Information

Type
Research Article
Copyright
© Royan Institute for Reproductive Biomedicine, 2022. Published by Cambridge University Press
Figure 0

Figure 1. Schematic representation of the studied CpG islands in the (A) H19, (B) MEST and (C) SNRPN genes. The number and location of each CpG are shown as a lollipop.

Figure 1

Table 1. Sequence of primers used in MS-HRM technique

Figure 2

Table 2. Demographic and biochemical characteristics of the study participants

Figure 3

Table 3. Sperm parameters including semen volume, pH, sperm concentration (×106/ml), morphology, progressive motility, total motility and viability and also SDF in the control and study groups

Figure 4

Figure 2. Box-and-whisker plot shows the comparison of global methylation levels in the studied groups (P < 0.01). Control group was normozoospermic non-diabetic individuals, D.N stands for normozoospermic type 2 patients and D.Non-N stands for non-normozoospermic type 2 diabetic patients. a,bDifferent letters in the columns indicate a significant difference among the groups.

Figure 5

Figure 3. MS-HRM standard curves of H19 promoter region. (A) Aligned melt curves, (B) difference plot and (C) derivative melt curves of 100, 99, 98, 97, 96, 95, 90, 75%, and 50% and 0% methylated DNA standards, normalized to the 100% methylated DNA. Aligned melt curves (A) show that the 100% methylated DNA had a higher melting temperature compared with unmethylated DNA. The melting temperatures of 99, 98, 97, 96, 95, 90, 75%, and 50% methylated DNA standards were between the 100% and unmethylated DNA standards related to the percentage methylation. (C) Negative first derivative of the melting curve (C) means that the 100% methylated and unmethylated DNA had one peak, but 99, 98, 97, 96, 95, 90, 75%, and 50% standards had two melt peaks demonstrating each DNA standard.

Figure 6

Figure 4. MS-HRM standard curves of MEST differentially methylated region (DMR). (A) Aligned melt curves, (B) difference plot and (C) derivative melt curves of 100, 50, 25, 10, 5%, 4% 3, 2, 1% and 0% methylated DNA standards, normalized to the 0% methylated DNA. Aligned melt curves (A) show that the 100% methylated DNA had a higher melting temperature compared with unmethylated DNA. The 50, 25, 10, 5, 4, 3, 2 and 1% methylated DNA standards had a melting temperature between the 100% and unmethylated DNA standards representative of the methylation percentage. (C) Negative first derivative of the melting curve (C) and shows that only the 100% methylated and unmethylated DNA had one melt peak, and the rest had two melt peaks respective of each of the DNA standards.

Figure 7

Figure 5. MS-HRM standard curves of SNRPN differentially methylated region (DMR). (A) Aligned melt curves, (B) difference plot and (C) derivative melt curves of 100, 50, 25, 10, 5, 4, 3, 2, 1% and 0% methylated DNA standards, normalized to the 0% methylated DNA. Aligned melt curves (A) show that the 100% methylated DNA had a higher melting temperature compared with unmethylated DNA for each gene analyzed using MS-HRM. The 50, 25, 10%, 5, 4, 3, 2% and 1% methylated DNA standards had a melting temperature situated between the 100% and unmethylated DNA standards that is related to the percentage methylation of the sample. The graph of the negative first derivative of the melting curve (C) shows that the 100% methylated and unmethylated DNA had only one melt peak, whereas 50, 25, 10, 5, 4, 3, 2% and 1% standards had two melt peaks representative of each of the DNA standards.

Figure 8

Figure 6. Comparison of (A) H19 (P < 0.05), (B) MEST (P = 0.07) and (C) SNRPN (P < 0.01) CpG methylation percentage between the studied groups. Control group was normozoospermic non-diabetic individuals, D.N stands for normozoospermic type 2 diabetic patients and D.Non-N stands for non-normozoospermic type 2 diabetic patients. n = 14 in each group. Different letters on columns indicate significant difference among the groups.