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Synthesis and structure of calumetite-like SrCu4(OH)8Cl2⋅3.5H2O

Published online by Cambridge University Press:  17 September 2021

Wilson A. Crichton*
Affiliation:
ESRF- The European Synchrotron, 71 avenue des Martyrs, 38000 Grenoble, France
Harald Müller
Affiliation:
ESRF- The European Synchrotron, 71 avenue des Martyrs, 38000 Grenoble, France
Matteo Leoni
Affiliation:
Saudi Aramco R&D Center, PO BOX 62, 31311 Dhahran, Saudi Arabia
*
*Author for correspondence: Wilson A. Crichton, Email: crichton@esrf.fr
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Abstract

The synthesis and structure of the title compound, 1, is presented, refined using Rietveld against powder X-ray diffraction data. 1 crystallises dominantly in a pseudotetragonal C-centred orthorhombic lattice with dimensions a = 6.6791(6) Å, b = 15.5006(6) Å, c = 6.6811(6) Å and V = 691.70(10) Å3. The structural model proposed here refined by Rietveld is Sr0.928(8)Cu4(OH)8Cl2⋅3.60(21)H2O in space group Cmcm (63), with Z = 2. The chemistry and diffraction pattern of 1 are similar to that for the known Ca analogue, calumetite. The copper sites are arranged with square planar coordination at ¼ and ¾ height and are bonded to four (protonated) oxygens at an average of 1.966 Å (effective coordination of 3.82 Å). The more distant Cl sites (at Cu−Cl = 3.190(6) Å) complete the heavily Jahn–Teller distorted Cu[(OH)4,Cl2] polyhedra. The ½-occupied Sr sites are 8 coordinated to four protonated oxygens shared with the Cu-layer (at 2 × 2.438(8) Å, 2 × 2.566(15) Å) and by 4 bonds to the proposed water sites (Sr−Ow = 2.760(9) Å). The structure of 1 is predisposed towards defects, based on a notional tetragonal, P4/nmm, substructure with asub ≈ a1, csub = b½ dimensions. Average diffraction models have been further elaborated in order to resolve additional peaks (and peak-shapes) using DIFFaX+.

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Article
Copyright
Copyright © The Author(s), 2021. Published by Cambridge University Press on behalf of The Mineralogical Society of Great Britain and Ireland
Figure 0

Table 1: Results of the synthesis of atacamite and kapellasite-like compounds using compressed air as oxidant.

Figure 1

Table 2. Results of the synthesis of atacamite and kapellasite-like compounds using oxygen as oxidant.

Figure 2

Fig. 1. Rietveld refinement of data from ID31 using Jana2006 against the model produced for 1 shown inset, using Vesta (Momma and Izumi, 2011). Excluded regions correspond to lattice doubled (hk0) positions.

Figure 3

Table 3. Crystal data, data collection and structure refinement details.

Figure 4

Table 4. Atom positions, occupancies and temperature factors.

Figure 5

Table 5. Selected bond and interatomic distances (Å).

Figure 6

Fig. 2. (a) The basis is produced by halving the average structure over a doubled lattice. Adjacent layers may be combined with different TVs that give rise to edge-, corner- and face-sharing SrOH–H2O polyhedral. Calculation of end-members and comparing these with the observed diffraction data (b) highlights the gross similarity of these models, their characteristic differences both between each other and with the observed (arrows) and their inability to fit those peaks characteristic of disordered layer structures (starred) when their probabilities are refined.

Figure 7

Fig. 3. Ordering over a 2a1, 2a1 lattice provides 6 bases that can be combined following the refinement of their populating probabilities to provide a model for site disorder (or Sr ordering within layers, for all other atoms are effectively constant), over the modelling of the diffraction intensities. These 6 layers reduce to two, which, if used, would provide for a more elegant model construction, in Pnma and P4mm.

Figure 8

Fig. 4. (a) The refined structures of 1 following refinement of probability of Sr ordering schemes occurring in face-sharing arrangement, including the possibility of disordered layers (leftmost three, viewed along equivalent a, c, <110>), without (central three; available as crystallographic information files, deposited with the Principal Editor of Mineralogical Magazine and available as Supplementary material) and the Rietveld refined average structure (rightmost). These models are compared with the observed in part (b), showing from top, observed, with ordered model, with disordered allowed, without disordered layers in grey, followed by the Rietveld calculated pattern and, in green, the result of refining stacking sequences (edge-, corner- and face-sharing) average layers. The former pair and the latter pair produce equivalent fits with the former the only models that reproduce relevant intensities at the asterisked locations. The structure is therefore best modelled by stacking sequences of ordered layers in an edge-sharing arrangement, where the presence of some defective disordered layers does not degrade the fit quality.

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