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Sculpting light by arranging optical components with DNA nanostructures

Published online by Cambridge University Press:  08 December 2017

Mauricio Pilo-Pais
Affiliation:
Ludwig-Maximilians-Universität München, Germany; m.pilopais@lmu.de
Guillermo P. Acuna
Affiliation:
Technische Universität Braunschweig, Germany; g.acuna@tu-braunschweig.de
Philip Tinnefeld
Affiliation:
Ludwig-Maximilians-Universität München, Germany; philip.tinnefeld@cup.uni-muenchen.de
Tim Liedl
Affiliation:
Ludwig-Maximilians-Universität München, Germany; tim.liedl@physik.lmu.de

Abstract

DNA nanotechnology has developed into a state where the design and assembly of complex nanoscale structures is fast, reliable, cost effective, and accessible to nonexperts. Nanometer-precise positioning of organic (e.g., dyes and biomolecules) and inorganic (e.g., metal nanoparticles and colloidal quantum dots) components on DNA nanostructures is straightforward and modular. In this article, we identify the opportunities and challenges that DNA-assembled devices and materials face for optical antennas, metamaterials, and sensing applications. With the ability to arrange hybrid components in defined geometries, plasmonic effects will, for example, amplify molecular recognition transduction such that single-molecule events will be measureable with simple devices. On a larger scale, DNA nanotechnology has the potential to break the symmetry of common self-assembled functional materials, creating predefined optical properties such as refractive-index tuning and topological insulation.

Information

Type
Research Article
Copyright
Copyright © Materials Research Society 2017 
Figure 0

Figure 1. DNA as a building material for nanophotonics. DNA templates are used to assemble a great variety of nanophotonic structures that span across optical antennas (e.g., nanoparticle dimers of various sizes are used to increase fluorescence rates and enhance emissions in the weak coupling regime and to promote coherent energy exchange in the strong coupling regime), metamaterials (e.g., 3D crystals, ultrafast plasmon passage, magnetic resonances), and sensing (e.g., reconfigurable structures via strand displacement [green DNA strand displaces blue strand due to higher complementarity] or photoactivated switches [azobenzene molecules undergo conformational change upon light excitation, which can be used to dehybridize double-stranded DNA]). Note: UV, ultraviolet; VIS, visible; |α> and |β>, upper and lower energy eigenstates.

Figure 1

Figure 2. DNA-mediated plasmonic nanostructures used to sculpt light displaying (a) circular dichroism of nanoparticles (NPs) arranged on DNA templates in a static handedness conformation (graph: circular dichroism signal of left- [red] and right- [blue] handed structures). Scale bars = 20 nm.56 (b) Circular dichroism of nanorods on DNA templates with reconfigurable handedness conformation via DNA strand displacement (graph: changes of circular dichroism signal upon addition of DNA strands, R1 and $\overline {{{\rm{R}}_1}}$, which locks the structure in a given handedness configuration).59 (c) Enhanced fluorescence in nanoantennas made of 80 nm NPs (graph: antenna dimers [black dots] display both enhanced fluorescence and faster decay rates, compared to monomers [red dots]. Regions I, II, and III correspond to structures with no NP, one NP, and two NPs, respectively).22 (d) Strong coupling between plasmon and exciton (graph: the spectral overlap of the plasmon [black] and J-aggregate [red] systems nearby a NP dimer nanocavity results in two new eigenstates [ω+ and ω–] displaying the characteristic Rabi splitting [blue]).53 (e) Photonic crystal self-assembled into a rhombic dodecahedron using DNA-modified gold NPs. Red arrows represent light entering through the top facet normal to the substrate, while the blue arrows represent light entering through the side slanted facets (graph: backscattering spectrum of the polaritonic photonic crystal [red solid line] and theoretical models [blue lines] [scanning electron micrograph of photonic crystal]). Scale bar = 1 μm. Reprinted with permission from Reference 72. © 2015 National Academy of Sciences. (f) Reconfigurable plasmonic structure (graph: change of absorption spectrum due to conformational change). Reprinted with permission from Reference 60. © 2015 Macmillan Publishers Ltd. Note: R1, DNA fuel strand; $\overline {{{\rm{R}}_1}} ,$ DNA strand complementary to fuel strand; ω+, upper eigenstate; ω–, lower eigenstate; NR, nanorod.

Figure 2

Figure 3. Point-of-need devices for virus detection through DNA detection. (Left) If the target DNA is present, it hybridizes to the complementary strand protruding from the hotspot of the plasmonic cavity. At the second step, an imager strand modified with a fluorophore is added. The high fluorescence enhancement enabled by the plasmonic nanocavity can serve to detect single molecules with simple devices such as slightly modified smartphones.82