Hostname: page-component-74656f9884-j7cmm Total loading time: 0 Render date: 2026-11-07T06:13:21.763Z Has data issue: false hasContentIssue false

Housekeeping genes for RT-qPCR in ovine preimplantation embryos

Published online by Cambridge University Press:  30 July 2020

Pábola Santos Nascimento
Affiliation:
Departamento de Medicina Veterinária, Universidade Federal Rural de Pernambuco, Brazil
Marcelo Tigre Moura*
Affiliation:
Departamento de Medicina Veterinária, Universidade Federal Rural de Pernambuco, Brazil
Roberta Lane Oliveira Silva
Affiliation:
Departamento de Genética, Universidade Federal de Pernambuco, Brazil
Pamela Ramos-Deus
Affiliation:
Departamento de Medicina Veterinária, Universidade Federal Rural de Pernambuco, Brazil
José Carlos Ferreira-Silva
Affiliation:
Departamento de Medicina Veterinária, Universidade Federal Rural de Pernambuco, Brazil
Joane Isis Travassos Veira
Affiliation:
Departamento de Medicina Veterinária, Universidade Federal Rural de Pernambuco, Brazil
Antônio Santana Santos Filho
Affiliation:
Instituto Agronômico de Pernambuco, Arcoverde, Pernambuco, Brazil
Sebastião Inocêncio Guido
Affiliation:
Instituto Agronômico de Pernambuco, Arcoverde, Pernambuco, Brazil
Cláudio Coutinho Bartolomeu
Affiliation:
Departamento de Medicina Veterinária, Universidade Federal Rural de Pernambuco, Brazil
Ana Maria Benko-Iseppon
Affiliation:
Departamento de Genética, Universidade Federal de Pernambuco, Brazil
Marcos Antonio Lemos Oliveira
Affiliation:
Departamento de Medicina Veterinária, Universidade Federal Rural de Pernambuco, Brazil
*
Author for correspondence: Marcelo Tigre Moura. Laboratório de Biotécnicas Aplicadas à Reprodução, Departamento de Medicina Veterinária, Universidade Federal Rural de Pernambuco, Av. Dom Manoel de Medeiros s/n, Dois Irmãos, Recife, CEP. 52171-900. Brazil. Tel: +55 8133206414. E-mail: marcelotmoura@gmail.com
Rights & Permissions [Opens in a new window]

Summary

Housekeeping genes (HKG) are paramount for accurate gene expression analysis during preimplantation development. Markedly, quantitative reverse transcription polymerase chain reaction (RT-qPCR) in ovine embryos currently lacks HKGs. Therefore, we tested 11 HKGs for RT-qPCR normalization during ovine parthenogenetic preimplantation development. Seven HKGs reached the qPCR efficiency threshold (97.20–105.96%), with correlation coefficients ranging from −0.922 to −0.998 and slopes from −3.22 to −3.59. GeNorm ranked glyceraldehyde 3-phosphate dehydrogenase (GAPDH) and TATA-binding protein (TBP) as the best HKG pair, while H3 histone, family 3A (H3F3A) was the third HKG. Relative gene expression was measured for zinc finger protein X-linked (ZFX) and developmental pluripotency-associated 3 (DPPA3) transcripts during ovine parthenogenetic preimplantation development. ZFX did not show any transcript abundance fluctuation among oocytes, cleavage-stage embryos, and morulae. DPPA3 transcript abundance was also similar among all developmental stages, therefore suggesting that it may not display a maternal gene expression profile. In silico analysis of ovine DPPA3 mRNA and protein showed high conservation to bovine orthologues. However, DPPA3 orthologues differed in regulatory motifs. In conclusion, GAPDH, TBP and H3F3A are stable HKGs in ovine parthenogenetic embryos and allow accurate RT-qPCR-based gene expression analysis.

Information

Type
Research Article
Copyright
© The Author(s), 2020. Published by Cambridge University Press
Figure 0

Table 1. Primers for RT-qPCR of housekeeping genes and target genes in ovine oocytes and preimplantation embryos

Figure 1

Figure 1. Experimental design. Ovine preimplantation development to the blastocyst stage. Total RNA extraction in specific developmental stages. ICM, inner cell mass.

Figure 2

Figure 2. Ovine preimplantation development. (a) Oocyte after in vitro maturation. (b) Cleavage-stage embryo. (c) Morula-stage embryo. (d) Pool of 20 embryos used for RNA extraction. ×160 (a–c) and ×40 (d) magnification.

Figure 3

Table 2. Primer efficiency determined using the standard curve method

Figure 4

Table 3. Housekeeping gene (HKG) ranking using GeNorm

Figure 5

Figure 3. Housekeeping gene stability values determined by GeNorm during early ovine preimplantation development.

Figure 6

Figure 4. Most appropriate number of housekeeping genes determined by GeNorm for RT-qPCR normalization during early ovine preimplantation development.

Figure 7

Figure 5. (a–c) Relative expression of DPPA3 and ZFX gene transcripts using REST and different RT-qPCR normalization settings (GAPDH and TBP or GAPDH, H3F3A, and TBP). GAPDH, glyceraldehyde 3-phosphate dehydrogenase; H3F3A, H3 histone, family 3A; TBP, TATA-binding protein; REST, relative expression software tool.

Figure 8

Figure 6. In silico characterization of the ovine DPPA3 mRNA and protein. (a) Schematic representation of the ovine and bovine DPPA3 mRNAs. (b) Number of predicted RNA-binding proteins (trans-acting factors) by RegRNA 2.0. (c) Alignment of ovine and bovine DPPA3 protein orthologues by MUSCLE. The DPPA3 N-terminal sequence is highlighted as it is predicted to bind to chromatin (Nakamura et al., 2012). C, CPE-like sequence; ORF, open reading frame; PA, polyadenylation site.

Supplementary material: PDF

Nascimento et al. supplementary material

Nascimento et al. supplementary material

Download Nascimento et al. supplementary material(PDF)
PDF 1.8 MB