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Utilization and Yield of a Stool Enteric Pathogen Panel in Hospitalized Patients with Cancer with Community vs Hospital-onset Diarrhea

Published online by Cambridge University Press:  23 June 2026

Emily Rosen
Affiliation:
Fred Hutch Cancer Center / University of Washington
Shandra Truong
Affiliation:
Vaccine and Infectious Disease Division, Fred Hutch Cancer Center
Elizabeth M. Krantz
Affiliation:
Fred Hutch Cancer Center
Allison Thibodeau
Affiliation:
Fred Hutchinson Cancer Center
Cynthia Wallace
Affiliation:
University of Washington
Frank Tverdek
Affiliation:
Fred Hutch Cancer Center
Pooja Bhattacharyya
Affiliation:
Fred Hutch Cancer Center
Regina Lengermann
Affiliation:
FHCC
Michelle Swetky
Affiliation:
Fred Hutch Cancer Center
Salma Walji
Affiliation:
Fred Hutch Cancer Center
Marie Wilson
Affiliation:
Fred Hutchinson Cancer Center
Lori Bourassa
Affiliation:
University of Washington Medical Center Montlake Campus
Sandra Olson
Affiliation:
Fred Hutchinson Cancer Center
Joanne Lang
Affiliation:
Fred Hutch Cancer Center
Masumi Ueda Oshima
Affiliation:
Fred Hutchinson Cancer Center
Steven Pergam
Affiliation:
Fred Hutchinson Cancer Center
Catherine Liu
Affiliation:
Fred Hutchinson Cancer Center

Abstract

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Background: Diarrhea is common among patients with cancer, and rapid diagnosis of gastrointestinal (GI) infections using a multiplex stool enteric pathogen panel (EPP) may expedite clinical decision-making and inform infection prevention measures. However, the diagnostic yield of EPPs in patients with cancer with hospital-onset diarrhea is not well defined. At our center, inpatient diarrhea testing guidelines recommend EPP testing primarily in those with community-onset diarrhea. We aimed to assess adherence to these EPP testing guidelines and describe EPP diagnostic yield in hospitalized patients with cancer to identify opportunities for diagnostic stewardship. Methods: We retrospectively reviewed EPP and stand-alone C. difficile (SACD) tests ordered between July 1, 2021 – May 23, 2025 among hospitalized patients (age ≥18 years) with a malignancy diagnosis. Our center recommends EPP testing (BIOFIRE® FILMARRAY® GI Panel) for community-onset diarrhea (on or before hospital day [HD] 3) and SACD testing for hospital-onset diarrhea (after HD 3). EPPs may be ordered after HD 3 for patients with unexplained prolonged or bloody diarrhea. Results: A total of 3338 stool tests (1433 EPP, 1905 SACD) were performed among 2131 patients. Among EPPs, 468 (33%) were ordered after HD 3 whereas 1621 (85%) SACD tests were ordered after HD 3 (Figure 1). The proportion of EPPs ordered after HD 3 was highest among patients with hematologic malignancies (44%) compared to other cancer types and higher among hematopoietic cell transplant (HCT) recipients versus non-HCT recipients (54% vs. 22%; Figure 2). Among EPPs ordered after HD 3, 102/468 (22%) were positive for ?1 pathogen compared to 288/965 (30%) EPPs ordered on HD 1-3. At least 1 non-C. difficile pathogen was detected in 49/468 (10%) EPPs ordered after HD 3 compared to 146/965 (15%) on HD 1-3 (Table 1). Among EPPs with non-C. difficile pathogens detected after HD 3, norovirus was most frequent (26/468; 6%; Table 1). Conclusion: EPP detection of non-C. difficile pathogens among hospitalized patients with cancer was lower in patients with hospital-onset diarrhea compared to those with community-onset diarrhea. Most EPP orders after HD 3 at our center occurred in HCT recipients and patients with hematologic malignancies. Additional studies are needed to determine the clinical significance of positive EPP results beyond HD 3 and understand which patients may benefit most from EPP testing beyond HD 3.

A stacked bar chart comparing the number of EPP and stand-alone C. difficile test orders by hospital day.

Multiple pie charts depict the number and percent of EPP tests ordered before versus after hospital day 3 by oncology diagnosis type and HCT status.

A table showing EPP results among hospitalized patients with cancer.

Information

Type
Diagnostic Stewardship
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution, and reproduction in any medium, provided the original work is properly cited.
Copyright
© The Author(s), 2026. Published by Cambridge University Press on behalf of The Society for Healthcare Epidemiology of America