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Gene expression profiling in developing pig adipose tissue: non-secreted regulatory proteins

Published online by Cambridge University Press:  02 February 2011

G. J. Hausman*
Affiliation:
USDA-ARS, Russell Agricultural Research Center, Athens, GA 30604, USA
C. R. Barb
Affiliation:
USDA-ARS, Russell Agricultural Research Center, Athens, GA 30604, USA
R. G. Dean
Affiliation:
Animal Science Department, University of Georgia, Athens, GA 30602, USA

Abstract

The expression of many genes encoding secreted and non-secreted factors have been studied in human and rodent adipose tissue with cDNA microarrays, but few such studies in adipose tissue from growing pigs have been reported. Total RNA was collected at slaughter from outer subcutaneous adipose tissue (OSQ) and middle subcutaneous adipose tissue (MSQ) samples from gilts at 90, 150 and 210 days (n = 5/age). Dye-labeled cDNA probes were hybridized to custom microarrays (70-mer oligonucleotides) representing about 600 pig genes involved in growth and reproduction. Gene expression intensity ratios changed little with age for 100 transcription factors, nuclear receptors, enzymes and other regulatory proteins in OSQ and MSQ from pigs between 90 and 210 days of age. However, the relative expression of 13 genes distinguished OSQ and MSQ depots in growing pigs. The expression of several genes were influenced by age including an increase in CCND3, HSF1 and PTGR1 expression in MSQ and a decrease in UCP2 and REA (prohibitin-2) expression in OSQ. These studies demonstrate for the first time the expression of several key regulatory genes in pig adipose tissue. Simple linear regression analysis showed that leptin gene expression was associated with expression of some of these regulatory genes. Negative associations between expression of some regulatory factors and leptin gene expression indicated that local leptin may decrease or antagonize adipogenesis.

Information

Type
Full Paper
Copyright
Copyright © The Animal Consortium 2011
Figure 0

Table 1 Identities of nuclear and other regulatory factors, signaling factors and enzymes examined in outer and middle subcutaneous adipose tissue microarrays from 90, 150 and 210 days old pigs

Figure 1

Figure 1 Middle subcutaneous adipose tissue gene expression intensities for five individual pigs at each of the three ages studied, that is, 90, 150 and 210 days. When considering gene expression at the individual pig level, a positive association of TCF7L1 and LRP6 gene expression with leptin expression is demonstrated, whereas RAB9B and HIPK3 expression is negatively associated with leptin gene expression.

Figure 2

Table 2 Primer pairs for each selected gene, reporter 1 sequence and Genebank accession number from which the primer pairs were selected

Figure 3

Table 3 Significant simple linear regression coefficients between individual pig leptin gene expression values and individual expression values of other genes for 90, 150 and 210 days data combined

Figure 4

Table 4 The relative expression of transcription factors, nuclear receptors, enzymes, and regulatory proteins for middle (MSQ) and outer (OSQ) adipose tissue based on combined microarray data from 90, 150 and 210 days old pigsa

Figure 5

Table 5 Gene expression in middle (MSQ) and outer (OSQ) subcutaneous adipose in growing pigs that is not influenced by age: real time RT-PCR crossing points (CP = Ct) and gene expression ratios (ratios)

Figure 6

Table 6 Gene expression influenced by age between 90 and 210 days in middle subcutaneous (MSQ) adipose tissue in growing pigs: real time RT-PCR analysis

Figure 7

Table 7 Gene expression influenced by age in the outer (OSQ) adipose tissue in growing pigs: real time RT-PCR analysis