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Yield of a multiplexed gastrointestinal polymerase chain reaction panel for evaluation of diarrhea in hospitalized patients with cancer: a diagnostic stewardship opportunity

Published online by Cambridge University Press:  12 November 2026

Emily A. Rosen*
Affiliation:
Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center , Seattle, USADivision of Allergy and Infectious Diseases, University of Washington , Seattle, USA
Shandra Truong
Affiliation:
Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center , Seattle, USA
Elizabeth M. Krantz
Affiliation:
Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center , Seattle, USA
Allison Thibodeau
Affiliation:
Clinical Analytics, Fred Hutchinson Cancer Center, Seattle, USA
Cynthia K. Wallace
Affiliation:
Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center , Seattle, USADivision of Allergy and Infectious Diseases, University of Washington , Seattle, USA
Zahra Kassamali Escobar
Affiliation:
Department of Pharmacy, Fred Hutchinson Cancer Center, Seattle, USADepartment of Pharmacy, University of Washington, Seattle, USA
Pooja Bhattacharyya
Affiliation:
Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center , Seattle, USA
Regina Lengermann
Affiliation:
Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center , Seattle, USA
Michelle Swetky
Affiliation:
Infection Prevention, Quality Department, Fred Hutchinson Cancer Center, Seattle, USA
Salma Walji
Affiliation:
Infection Prevention, Quality Department, Fred Hutchinson Cancer Center, Seattle, USA
Marie H. Wilson
Affiliation:
Infection Prevention, Quality Department, Fred Hutchinson Cancer Center, Seattle, USA
Lori Bourassa
Affiliation:
Department of Laboratory Medicine and Pathology, University of Washington, Seattle, USA
Sandra Olson
Affiliation:
Nursing and Clinical Operations, Fred Hutchinson Cancer Center, Seattle, USA
Joanne Lang
Affiliation:
Division of Hematology and Oncology, University of Washington, Seattle, USA
Masumi Ueda Oshima
Affiliation:
Division of Hematology and Oncology, University of Washington, Seattle, USAClinical Research Division, Fred Hutchinson Cancer Center, Seattle, USA
Steven A. Pergam
Affiliation:
Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center , Seattle, USADivision of Allergy and Infectious Diseases, University of Washington , Seattle, USAInfection Prevention, Quality Department, Fred Hutchinson Cancer Center, Seattle, USAClinical Research Division, Fred Hutchinson Cancer Center, Seattle, USA
Catherine Liu
Affiliation:
Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Center , Seattle, USADivision of Allergy and Infectious Diseases, University of Washington , Seattle, USAClinical Research Division, Fred Hutchinson Cancer Center, Seattle, USA
*
Corresponding author: Emily A. Rosen; Email: erosen@fredhutch.org

Abstract

Background:

Multiplexed polymerase chain reaction gastrointestinal panels (GIPs) include mostly community-acquired pathogens. Diagnostic yield of GIPs for detection of non-Clostridioides difficile targets in hospitalized patients with cancer with community versus hospital-onset diarrhea is not well defined.

Methods:

This cross-sectional study included stool tests from hospitalized adults with a cancer diagnosis from July 2021 to May 2025. Our center recommends a GIP primarily for patients with community-onset diarrhea and stand-alone C. difficile testing for hospital-onset diarrhea. Generalized estimating equations with Poisson regression were used to estimate the prevalence ratio (PR) of detecting ≥1 non-C. difficile target after hospital day (HD) 3 compared to HD 1–3.

Results:

Among 1,433 GIPs from 1,127 patients, 468 (33%) were ordered after HD 3. Most GIPs were among patients with hematologic malignancies (794/1,433; 55%) and of those tests 352/794 (44%) were ordered after HD 3. Among all GIPs, C. difficile and norovirus were detected most frequently (16% and 6%, respectively). A non-C. difficile target was detected after HD 3 on 49/468 GIPs (10%), compared to 146/965 (15%) GIPs on HD 1–3 (adjusted PR 0.73; 95% CI [0.53–1.00]; P = .053). Among 49 GIPs after HD 3 detecting ≥1 non-C. difficile target, 19 tests were ordered for new-onset diarrhea and only 5 of these patients received intentional antimicrobial therapy in response to the GIP result.

Conclusions:

The added diagnostic yield for detecting ≥1 non-C. difficile target by GIP in patients with cancer and hospital-onset diarrhea is limited and supports restricting GIP ordering after HD 3 on oncology units.

Information

Type
Original Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2026. Published by Cambridge University Press on behalf of The Society for Healthcare Epidemiology of America
Figure 0

Table 1.Cohort characteristics (patient-level)aTable 1 long description.

Figure 1

Table 2.GIP orders by diagnosis type and HCT statusTable 2 long description.

Figure 2

Table 3.GIP yield among hospitalized patients with CancerTable 3 long description.

Figure 3

Table 4.GEE Poisson regression model estimates for prevalence ratios of detecting ≥1 non-C. difficile target by GIPTable 4 long description.

Figure 4

Table 5.Intentional treatment of non-C. difficile targets detected by GIP ordered after HD 3aTable 5 long description.

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