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Structural elucidation of the dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI) (C14H12Cl2MoN2O2)

Published online by Cambridge University Press:  18 September 2024

John D. Bonilla
Affiliation:
Laboratorio de Diseño y Reactividad de Estructuras Sólidas (Lab-DRES, 125), Departamento de Química, Facultad de Ciencias, Universidad Nacional de Colombia, Carrera 30 No. 45-03, Bogotá́ 11321, Colombia
Hernando Camargo
Affiliation:
Grupo de Investigación de Materiales de Interés Geológico y Geotécnico, Servicio Geológico Colombiano SGC, Diagonal 53 No. 34-53, Bogotá́, Colombia
Nelson J. Castellanos*
Affiliation:
Laboratorio de Diseño y Reactividad de Estructuras Sólidas (Lab-DRES, 125), Departamento de Química, Facultad de Ciencias, Universidad Nacional de Colombia, Carrera 30 No. 45-03, Bogotá́ 11321, Colombia
*
a)Author to whom correspondence should be addressed. Electronic mail: njcastellanosm@unal.edu.co

Abstract

In this work, the synthesis, characterization, and X-ray powder diffraction data for dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI) are reported. The crystal structure of this compound was solved from powder diffraction data using the simulated annealing method with a subsequent refinement using the Rietveld method. The dioxo-molybdenum (VI) complex C14H12Cl2MoN2O2 crystallizes in a monoclinic system with space group C2/c (N° 15) with refined unit-cell parameters a = 12.9495 (5) Å, b = 9.7752 (4) Å,c = 12.0069 (6) Å, β = 101.702 (3) °, unit-cell volume V = 1488.27 (11) Å3, and values of Z′ = 0.5 and Z = 4. The molecules are organized into chains diagonally along the a and c axis. Parallel polyhedra are observed along these axes formed by the interactions of Mo, Cl, O, and N atoms present in the coordination sphere. The crystalline packing of this dioxo-molybdenum (VI) complex is dominated by five intermolecular hydrogen bonds, two intramolecular hydrogen bonds, and the four interactions between the centroids (CgI⋯CgJ) of the aromatic rings. An analysis of the Hirshfeld surface revealed that the greatest contributions of the attractive forces are given by H⋯Cl/Cl⋯H, H⋯C/C⋯H, H⋯O/O⋯H, and H⋯H interactions.

Information

Type
New Diffraction Data
Copyright
Copyright © The Author(s), 2024. Published by Cambridge University Press on behalf of International Centre for Diffraction Data
Figure 0

Figure 1. Synthesis of dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI).

Figure 1

Figure 2. Experimental XRPD diffractogram of the dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI) using Cu Kα radiation (blue solid line) and the refined pattern obtained using WPPD procedure (red solid line).

Figure 2

TABLE I. X-ray powder diffraction data obtained for the dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI) complex.

Figure 3

TABLE II. Atomic coordinates obtained for the compound dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI)

Figure 4

Figure 3. Rietveld refinement result of the dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI) (red line). The blue diffractogram corresponds to the experimental profile and the refinement residual is the gray baseline. The perpendicular solid blue lines correspond to the reflections of impurities identified in the material.

Figure 5

TABLE III. Experimental data for dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI)

Figure 6

Figure 4. Representation of the molecular structure of the dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI) with labeling of atoms and rings. Cg2 and Cg3 refer to the centroids of the aromatic rings.

Figure 7

Figure 5. Octahedral coordination of the cis-dioxo-molybdenum (VI) complex coordinated with chlorine and the bidentate nitrogenous ligand 4,7-dimethyl-1,10-phenanthroline.

Figure 8

TABLE IV. Most relevant geometric parameters of the dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI)

Figure 9

Figure 6. Representation of the intermolecular interactions of the C1–H1⋯Cl1 atoms in the crystalline packing of dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI).

Figure 10

Figure 7. Representation of the intermolecular interactions of the C13–H5⋯O1 atoms in the crystalline packing of dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI).

Figure 11

Figure 8. Representation of the intramolecular interactions between C5–H2⋯O1 atoms in the crystalline packing of dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI).

Figure 12

Figure 9. π–π interactions of the Cg2 centroids between neighborhood molecules (a) along the axes a (b) along the axes c.

Figure 13

Figure 10. π–π interactions between the centroid Cg2 and the centroid Cg3 along the axes a.

Figure 14

Figure 11. Analysis of the Hirshfeld surface (dnorm surface) of the dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI). The boxes show the atoms of the surrounding molecule with which the interaction is generated.

Figure 15

Figure 12. Hirshfeld surface analysis of the structure of the dioxo-molybdenum (VI) complex, (a) shape index and (b) curvature.

Figure 16

Figure 13. Fingerprints and their contributions in percentage for the most relevant interactions on the surface of the dichloridodioxido-[(4,7-dimethyl)-1,10-phenanthroline]molybdenum(VI) complex.