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Gene flow and fine-scale spatial genetic structure in Cabralea canjerana (Meliaceae), a common tree species from the Brazilian Atlantic forest

Published online by Cambridge University Press:  15 March 2016

Arthur Tavares de Oliveira Melo*
Affiliation:
Plant Genetics and Breeding College of Agronomy, Federal University of Goiás, Campus II, CP 131, Goiânia, GO, 74690–900, Brazil
Edivani Villaron Franceschinelli
Affiliation:
Botany Department, Biological Sciences Institute, Federal University of Goiás, Goiânia, GO, Brazil
*
1Corresponding author. Email: arthurmelobio@gmail.com
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Abstract:

The Atlantic forest is the biome most severely affected by deforestation in Brazil. Cabralea canjerana spp. canjerana is a dioecious tree species with widespread distribution in the Neotropical region. This species is considered a model to ascertain population ecology parameters for endangered plant species from the Atlantic forest. Fine-scale spatial genetic structure and pollen-mediated gene flow are crucial information in landscape genetics and evolutionary ecology. A total of 192 adults and 121 offspring were sampled in seven C. canjerana populations in the Southern Minas Gerais State, Brazil, to assess whether pollen-mediated gene flow is able to prevent spatial genetic structure within and among Atlantic forest fragments. Several molecular ecology parameters were estimated using microsatellite loci. High levels of genetic diversity (HE = 0.732) and moderate population structure (θ = 0.133) were recorded. No significant association between kinship and spatial distance amongst individuals within each population (Sp = 0.000109) was detected. Current pollen-mediated gene flow occurs mainly within forest fragments, probably due to short-distance flights of the pollinator of C. canjerana, and also the forest fragmentation may have restricted flight distance. The high levels of genetic differentiation found amongst the seven sites sampled demonstrated how habitat fragmentation affects the gene flow process in natural areas.

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Research Article
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Copyright © Cambridge University Press 2016 
Figure 0

Figure 1. Studied sites in the montane Atlantic Forest of southern Minas Gerais State, Brazil.

Figure 1

Table 1. Sample sites, geographic coordinates, demographic traits and number of individuals sampled in Cabralea canjerana subsp. canjerana populations of montane Atlantic forest fragments of Minas Gerais State, Brazil. The degree of isolation is the distance (km) from each site (forest fragment) to the largest sample site (forest fragment 7). Population density refers to the number of adult C. canjerana trees per hectare.

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Table 2. Genetic population parameters of Cabralea canjerana subsp. canjerana populations located at high altitudes in Atlantic forest fragments in southern Minas Gerais State, in Brazil. A and AR refer to the average of allele number and average allelic richness, respectively. HO is the observed heterozygosity and HE is the Nei gene diversity. f is the intrapopulation fixation index, θ / RST are measures of population genetic structure, b is the regression of kinship coefficient and Sp is the statistic used to quantify spatial genetic substructure. b is the regression of kinship coefficient and Sp is the statistic used to quantify spatial genetic substructure. Except for θ / RST, these parameters were estimated for each population individually and considered as a single overall population.

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Figure 2. Mantel test correlogram showing the pairwise relationship between Loiselle et al. (1995) kinship (Fij) and the geographic distance (metres) between individuals for the seven Cabralea canjerana subsp. canjerana populations evaluated at high altitudes in Atlantic forest fragments in southern Minas Gerais State, in Brazil.

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Figure 3. Geneland Bayesian allele frequency analysis and graphic representation showing the genetic structure of the population and the genetic boundaries of Cabralea canjerana subsp. canjerana populations in the landscape of the sites studied. Each group of black points represents one population. Populations 1 to 4 are represented in white, meaning that these four populations have a high posteriori probability (around 90%) of being correctly assigned to the same group. Populations 5, 6 and 7, represented in red, have a low posteriori probability (lower than 10%) of belonging to Group A (a), whilst in Group B (b), an opposite scenario is observed.

Figure 5

Table 3. Current pollen mediated gene-flow parameters of three Cabralea canjerana subsp. canjerana populations located at high altitudes in Atlantic forest fragments in southern Minas Gerais State, in Brazil. N/de is the number of adult individuals sampled divided by population density. ФFT = structure of the pollen cloud that fertilized different female trees; Ф′FT = ФFT/(1 + Fp) (Austerlitz & Smouse 2001); δ = pollen dispersal distance between different female trees; Nep = effective population size of pollen donor; Θxy = coancestry coefficient; Ne(v) = variance of the effective population size and Aep = effective size of the neighbourhood area (m2).