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Structure–functional intimacies of transient receptor potential channels

Published online by Cambridge University Press:  22 December 2009

Ramon Latorre*
Affiliation:
Centro de Interdisciplinario de Neurociencias de Valparaíso, Facultad de Ciencias, Universidad de Valparaíso, Gran Bretaña, Valparaíso, Chile
Cristián Zaelzer
Affiliation:
Centro de Interdisciplinario de Neurociencias de Valparaíso, Facultad de Ciencias, Universidad de Valparaíso, Gran Bretaña, Valparaíso, ChileEscuela de Graduados, Facultad de Ciencias, Universidad Austral de Chile, Valdivia, Chile
Sebastian Brauchi
Affiliation:
Instituto de Fisiología, Facultad de Medicina, Universidad Austral de Chile, Campus Isla Teja, Valdivia, Chile
*
*Author for correspondence: R. Latorre, Centro de Interdisciplinario de Neurociencias de Valparaíso, Facultad de Ciencias, Universidad de Valparaíso, Gran Bretaña 1111, Valparaíso 2340000, Chile. Email: ramon.latorre@uv.cl
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Abstract

Although a unifying characteristic common to all transient receptor potential (TRP) channel functions remains elusive, they could be described as tetramers formed by subunits with six transmembrane domains and containing cation-selective pores, which in several cases show high calcium permeability. TRP channels constitute a large superfamily of ion channels, and can be grouped into seven subfamilies based on their amino acid sequence homology: the canonical or classic TRPs, the vanilloid receptor TRPs, the melastatin or long TRPs, ankyrin (whose only member is the transmembrane protein 1 [TRPA1]), TRPN after the nonmechanoreceptor potential C (nonpC), and the more distant cousins, the polycystins and mucolipins. Because of their role as cellular sensors, polymodal activation and gating properties, many TRP channels are activated by a variety of different stimuli and function as signal integrators. Thus, how TRP channels function and how function relates to given structural determinants contained in the channel-forming protein has attracted the attention of biophysicists as well as molecular and cell biologists. The main purpose of this review is to summarize our present knowledge on the structure of channels of the TRP ion channel family. In the absence of crystal structure information for a complete TRP channel, we will describe important protein domains present in TRP channels, structure–function mutagenesis studies, the few crystal structures available for some TRP channel modules, and the recent determination of some TRP channel structures using electron microscopy.

Information

Type
Review Article
Copyright
Copyright © Cambridge University Press 2009
Figure 0

Fig. 1.Phylogeny of TRP channels. The phylogenetic tree shows the relationship between different TRP subfamilies. Sequence identity can be as low as 20%. TRPC2 is a pseudogene in human but not in rats. TRPN channels have not been identified in mammals.

Figure 1

Fig. 2.The seven TRP subfamilies and the gross architecture of their subunits. TRP channels are tetramers consisting of subunits containing six transmembrane (TM) segments (S1–S6). By analogy to K+ channels the central pore is assumed to be formed by the hairpin located in between TM S5 and S6. A variable number of ankyrin domains are present in the N-terminal of most TRP channels with the exception of TRPP and TRPM subfamilies. The crystal structure of this domain has been elucidated in the case of TRPV1, 2, and 6. TRPM6 and 7 are defined as chanzymes owing to the presence of a C-terminal a typical protein kinase domain. TRP and coiled coil domains are present in the C terminus domain (for more details, see text).

Figure 2

Fig. 3.Comparison of structures of TRP channels derived from electron microscopy studies. Cryoelectron microscopy structures: TRPV1, 19 Å (Moiseenkova et al. 2008); TRPC3, 15·3 Å (Mio et al. 2007). A comparison between the TRPV1 and the Kv1.2/β subunit structure (PDB code 2A79) is shown. The crystal structure of Kv1.2 and TRPV1 ankyrin domains were superimposed on the TRPV1 structure obtained using electron microscopy and T domain of Kv1.2 and β subunit were superimposed on the Kv1.2 structure obtained by cryomicroscopy. Negative stain structures, resolution: TRPM2, 37 Å (Maruyama et al. 2007).

Figure 3

Fig. 4.A signature sequence for TRP channels: the TRP domain. This domain contains – in some cases – a highly conserved region the ‘EWKFAR motif’ (see the TRPC family). The TRP box is defined by the consensus sequence WKFQR, where W is the only conserved residue among TRP families. In channels belonging to the TRPC and TRPM subfamilies, there is a second conserved sequence on the C terminus end of the TRP domain; this second box has the consensus sequence LPPPF.

Figure 4

Fig. 5.Ankyrin repeat domains in the TRPV subfamily. (a) Alignment of the ARD of mammalian TRPV channels. Residues conforming the inner and outer helices of the ankyrin domains are indicated as helices above each repeat. (b) Crystal structure of the ARD domain of TRPV1. Mofified from Lishko et al. (2007) and Phelps et al. (2008).

Figure 5

Fig. 6.Predicted TM segment 4 (S4) in human TRPM and TRPV subfamily. Alignments were performed by consensus using T-COFFEE v. (Notredame et al. 2000) and CLUSTALW. The sequences used in the alignments were extracted from NCBI GenBank.

Figure 6

Fig. 7.Homology model for the TRPV1 channel reveals a PIP2-binding site. Ribbon diagram of the TRPV1 channel depicting one subunit (S4, S5), a neighboring one (C-terminal), and one bound PIP2 molecule. The model predicts that K571 and R579 in the S4–S5 linker of one subunit as well as K694 in the C-terminal from the neighboring subunit are in close contact with the PIP2 molecule. TRPV1 homology models were built by using as reference structure the crystal structures of Kv1.2 (PDB:2A79) and HCN2 (PDB:1Q43) as templates for TM and C-terminal regions respectively. The construction of topology file of the PIP2 molecule is described by Brauchi et al. (2007).

Figure 7

Fig. 8.The coiled coil structure of the distal C terminus in TRPM channels. (a) Sequence alignments of TRPM coiled coil domains. Heptad repeat pattern of amino acids abcdefg is shown on top of the coiled coil domains and hydrophobic amino acids d and a denoted by vertical rectangles. Note that the coiled coil sequences are ordered according to their length and hydrophobic matching producing the two groups: TRPM7, 6, 1, 3 and TRPM8, 2, 4, 5. (b) The TRPM7 TM domains of two subunits, their respective C-terminals containing the antiparallel coiled coil assembly domain and the dimeric kinase domains are shown. Modified from Fujiwara & Minor (2008).

Figure 8

Fig. 9.Schematic representation of the thermoTRPs that function in temperatures ranging from noxious heat to noxious cold. Proposed membrane topology and functionally important domains are represented. Various plant compounds activate the thermoTRPs: TRPV1 is activated by capsaicin, the pungent ingredient in chilly peppers; TRPM8 is activated by menthol, the cooling compound from mint; TRPA1 is activated by various pungent compounds such as allicin, the active ingredient in garlic, and isothiocyanates, the pungent ingredients found in wasabe.

Figure 9

Fig. 10.Polymodal nature of TRPV1. (a) Left panel. Plots showing the normalized conductance in function of voltage at the indicated temperatures. Solid lines correspond to the best fit to Boltzmann functions (Brauchi et al. 2006). Right panel. single-channel currents recorded at different membrane potentials from an oocyte heterologously expressing TRPV1. Notice the progressive reduction in Po with hyperpolarisation (Premkumar et al. 2002). (b) Heat-evoked single channel activity in oocytes expressing TRPV1. The temperature was elevated from 25 to 50°C. Measurable activity was detected at ~42°C. Note the marked increase in burst duration as temperature is increased. Data were obtained from an inside-out patch at a holding potential of −60 mV (Liu et al. 2003). (c) Protons lower the threshold and increase the magnitude of heat-evoked currents in TRPV1-expressing cells. Currents were normalized to responses at 45°C (pH 7·6) (Tominaga et al. 1998). (d) VR1 responds to purified vanilloids and pepper extracts. Activation of TRPV1 by capsaicin and resinferatoxin. Membrane currents were recorded in the whole-cell voltage-clamp configuration. Bars denote duration of agonist application (Caterina et al. 1997). (e) Concentration dependence of the activation of TRPV1 by camphor (Xu et al. 2005).

Figure 10

Fig. 11.Polymodal nature of TRPM8. (a) TRPM8 is activated by cold temperature (12°C) and exhibits strong outward rectification (McKemy et al. 2002; Chuang et al. 2004). (b) Current–temperature recordings at holding potentials of −60 and +60 mV (Brauchi et al. 2004). Note that currents can be elicited with a threshold of about 18°C at −60 mV, suggesting that temperature sensors can be activated when the voltage sensors are at rest (see panel a). (c) The time course TRPM8 channel activation is well described by an initial lag followed by an exponential current increase. Top: Family of macroscopic TRPM8 ionic currents at two (22 and 10°C) different temperatures elicited in response to the variable depolarizing voltages shown in the pulse protocol. TRPM8 currents were measured using the whole-cell configuration of the patch clamp technique. Below each family of current records selected current records are shown in an enlarged time scale that allows appreciating the initial lag (Δt) of the ionic currents at the two temperatures studied. The single arrow indicates the time at which the test voltage pulse was applied. Below: Delay duration (Δt) is plotted versus test voltage pulse for three different experiments at two different temperatures. The delay has low temperature dependence (Q10=1·6 at +200 mV). (d) TRPM8 single-channel recordings at two temperatures: 28°C (low Po) and 20°C (high Po). Short- and long-duration closed states can be discerned. Recordings were obtained in cell-attached conditions; patches were performed on HEK293 transfected cells (Latorre et al. 2007b). (e) Voltage activation curves. Responses evoked by menthol (50 mm, grey) and cold (16 to 8°C, black) show strong outward rectification. Inset, baseline currents (black) and menthol-evoked responses (grey) in nominally Ca2+-free bath solution at room temperature. (f) Temperature–response curves (from 33 to 16°C) were determined for trigeminal neurons in the presence (grey) or absence (black) of 10 mm menthol. Menthol potentiated the size of cold-evoked currents and shifted thermal thresholds from 27·1±0·5 to 29·6±0·3°C. (g) Activation and current desensitization of icilin (2 mm) dependent on calcium (McKemy et al. 2002).

Figure 11

Fig. 12.An allosteric kinetic model to account for the thermoTRP channel gating. (a) We consider first the simple case in which the concentration of the agonist is zero and the system is at a temperature that is unable to activate the channel, in this case the gating mechanism includes an allosteric interaction between channel opening (C–O), voltage sensor activation (RV–AV). L is the C–O equilibrium constant when the voltage sensor is in the resting state (RV) and J is the RV–AV voltage-dependent equilibrium. D is the allosteric interaction factor such as the C–O equilibrium constant that increases D-fold when the channel opens. (b) A general allosteric gating mechanism includes an allosteric interaction between channel opening (C–O), voltage sensor activation, temperature sensor activation (RT–AT) and agonist activation (U–B). L would be, in this case, the C–O equilibrium constant when voltage sensors and temperature sensors are in the resting state (RV, RT) and the agonist binding sites are unliganded (U); K is the RT–AT temperature-dependent equilibrium constant; and Q is the agonist binding constant defined as Q=[A]/KD, where [A] is the agonist concentration and KD is the dissociation constant. Allosteric interactions of temperature sensors and agonist binding with channel opening are determined by allosteric factors P and C respectively. Allosteric interaction between voltage and temperature sensor, between agonist binding and voltage sensors, and between agonist binding and temperature sensors are determined by allosteric factors E1, E2, and E3 respectively.

Figure 12

Fig. 13.Polymodal nature of TRPA1. (a) Current–voltage relations obtained at ~30°C (black trace) ~15°C (grey trace) using Ca2+-free intracellular and extracellular solutions (Karashima et al. 2009). (b) Comparison of the temperature activation curves for TRPA1 and TRPM8 (Story et al. 2003). (c) Single-channel recordings show that TRPA1 is activated by deep cooling. Inside-out patch recordings (−80 mV) in membrane excised from TRPA1-expressing HEK293 cells. (c, closed state; o, open state). Downward deflections show inward current. (d) Open probabilities (Po) of the deep cooling-induced currents for 5–30 s, data as shown in (c) are plotted against temperature (Sawada et al. 2007). (e) THC and mustard oil activate a subset of sensory neurons. Electrophysiological response of a representative neuron to 20 mm THC or 20 mm mustard oil (MO) in the absence (MO) or presence (RR) of 5 mm ruthenium red. Voltage ramps from −100 to +80 mV (200 ms) were applied every 2 s. THC-evoked currents display slight outward rectification. Mustard oil activates identical currents of larger amplitude in the same cell. Ruthenium red (10 mm) blocks THC- and mustard oil-evoked currents (Jordt et al. 2004). (f) Left panel. TRPA1 is activated by intracellular Ca2+. Voltage activation curves are shown in the absence and presence of Ca2+. Right panel. Single-channel recordings from inside-out patches at the indicated potentials and internal Ca2+ concentrations (Zurborg et al. 2007).