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Geographical patterns of Toxoplasma gondii genetic diversity revealed by multilocus PCR-RFLP genotyping

Published online by Cambridge University Press:  05 December 2013

E. KEATS SHWAB
Affiliation:
Department of Microbiology, The University of Tennessee, Knoxville, TN 37996, USA
XING-QUAN ZHU
Affiliation:
State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, People's Republic of China
DEBASHREE MAJUMDAR
Affiliation:
Department of Microbiology, The University of Tennessee, Knoxville, TN 37996, USA
HILDA F. J. PENA
Affiliation:
Faculty of Veterinary Medicine, University of São Paulo, São Paulo, Brazil
SOLANGE M. GENNARI
Affiliation:
Faculty of Veterinary Medicine, University of São Paulo, São Paulo, Brazil
JITENDER P. DUBEY
Affiliation:
Animal Parasitic Diseases Laboratory, United States Department of Agriculture, Beltsville, MD 20705, USA
CHUNLEI SU*
Affiliation:
Department of Microbiology, The University of Tennessee, Knoxville, TN 37996, USA State Key Laboratory of Veterinary Etiological Biology, Key Laboratory of Veterinary Parasitology of Gansu Province, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences, Lanzhou, Gansu Province 730046, People's Republic of China
*
* Corresponding author: Department of Microbiology, The University of Tennessee, Knoxville, TN 37996, USA. E-mail: csu1@utk.edu
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Summary

In recent years, an extensive collection of Toxoplasma gondii samples have been typed using a set of 10 PCR-RFLP genetic markers. Here we summarize the data reported until the end of 2012. A total of 1457 samples were typed into 189 genotypes. Overall, only a few genotypes dominate in the northern hemisphere, which is in stark contrast to the southern hemisphere where hundreds of genotypes coexist with none being notably dominant. PCR-RFLP genotype #1 (Type II clonal), #2 (Type III), #3 (Type II variant) and #10 (Type I) are identified globally. Genotypes #2 and #3 dominate in Africa, genotypes #9 (Chinese 1) and #10 are prevalent in Asia, genotypes #1, #2 and #3 are prevalent in Europe, genotypes #1, #2, #3, #4 and #5 dominate in North America (#4 and #5 are collectively known as Type 12). In Central and South America, there is no clear dominance of any genotype even though a few have relatively higher frequencies. Statistical analysis indicates significant differences among populations in Africa, Asia, Europe, North America, and Central and South America, with only Europe and North America exhibiting similar diversity. Collectively, the results revealed distinct population structures and geographical patterns of diversity in T. gondii.

Information

Type
Review Article
Creative Commons
This is a work of the U.S. Government and is not subject to copyright protection in the United States.
Copyright
Copyright © Cambridge University Press 2013
Figure 0

Table 1. Toxoplasma gondii genotype designations for common lineages

Figure 1

Fig. 1. Geographical distribution of Toxoplasma gondii genotypes. Black dots indicate locations from which T. gondii isolates were obtained and genotyped using the PCR-RFLP method. The numbers around pie chart edges indicate ToxoDB PCR-RFLP genotypes. In some cases, alternative strain type designations are overlaid on pie charts in bold lettering (also see Table 1 for correlations between nomenclatures). Sizes of pie charts correlate with total number of isolates (n), and colours indicate different genotypes. Two strains (GANGI and WIK) reported from Africa without specific countries of origin were listed in Supplemental Table S1, but not included on this map.

Figure 2

Fig. 2. Pairwise Fst of five T. gondii populations from different geographical regions. Comparison of populations was conducted using Arlequin ver 3.5. Statistical significance is determined at P = 0·001. The ‘+’ sign indicates significant difference between two populations, whereas ‘−’ indicates non-significance. N. Am = North America, C. S. Am = Central and South America. The heat map indicates the Fst value. Due to small sample size (only 3 isolates), Australia was not included for analysis.

Figure 3

Table 2. Basic statistics of Toxoplasma gondii populations from different geographical regions

Figure 4

Table 3. Shared genotypes among geographical regions

Supplementary material: File

Shwab et al. Supplementary Material

Table S1

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