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The diversity, distribution and host-parasite associations of trypanosomes in Western Australian wildlife

Published online by Cambridge University Press:  07 August 2009

S. AVERIS
Affiliation:
WHO Collaborating Centre for the Molecular Epidemiology of Parasitic Infections and the State Agricultural Biotechnology Centre, School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Western Australia 6150, Australia
R. C. A. THOMPSON
Affiliation:
WHO Collaborating Centre for the Molecular Epidemiology of Parasitic Infections and the State Agricultural Biotechnology Centre, School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Western Australia 6150, Australia
A. J. LYMBERY
Affiliation:
WHO Collaborating Centre for the Molecular Epidemiology of Parasitic Infections and the State Agricultural Biotechnology Centre, School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Western Australia 6150, Australia
A. F. WAYNE
Affiliation:
Science Division, Department of Environment and Conservation, Manjimup, WA 6258, Australia
K. D. MORRIS
Affiliation:
Science Division, Department of Environment and Conservation, Wildlife Place, Woodvale WA 6026, Australia
A. SMITH*
Affiliation:
WHO Collaborating Centre for the Molecular Epidemiology of Parasitic Infections and the State Agricultural Biotechnology Centre, School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Western Australia 6150, Australia
*
*Corresponding author: WHO Collaborating Centre for the Molecular Epidemiology of Parasitic Infections and the State Agricultural Biotechnology Centre, School of Veterinary and Biomedical Sciences, Murdoch University, South Street, Western Australia 6150, Australia. Tel: 08 9965 0908. E-mail: andrew.smith@murdoch.edu.au
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Summary

Little is known regarding the diversity, distribution or host-parasite associations of Trypanosoma spp. in Australian wildlife. Here we report on an investigation based on divergence of the 18S rRNA gene of trypanosomes isolated from a range of hosts and varied geographical locations. A total of 371 individuals representing 19 species of native animals from 14 different locations were screened. In total, 32 individuals from 9 different species tested positive for the parasite. Phylogenetic analysis revealed considerable parasite diversity with no clear geographical distribution and no evidence of host specificity. In general, it appears that Australian Trypanosoma spp. are widespread, with several genotypes appearing in multiple host species and in varied locations including both mainland areas and offshore islands. Some host species were found to be susceptible to multiple genotypes, but no individuals were infected with more than a single isolate.

Information

Type
Research Article
Copyright
Copyright © Cambridge University Press 2009
Figure 0

Fig. 1. Map of Western Australia showing approximate locations of the 12 sampling sites in relation to Perth city (filled circle). Sampling sites in New South Wales (Scotia) and South Australia (Thistle Island) are not shown.

Figure 1

Table 1. Geographical location within Western Australia, host species, sample size and trypanosome infection prevalence (%) of samples collected during the present investigation(* Indicates data published previously by Smith et al. (2008). ** Indicates non-native species. NSW, New South Wales; SA, South Australia.)

Figure 2

Table 2. Trypanosoma species or isolate code, host species, geographical location and GenBank Accession number of the 44 genotypes included in the current analysis(Novel isolates detected during the present investigation are indicated by *.)

Figure 3

Fig. 2. Phylogram showing the relationship between 44 taxa at the 18S rRNA gene. The relationship was inferred using the neighbour-joining method. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (100 replicates) is shown next to the branches or indicated by arrows. The distances for neighbour-joining analysis were computed using the maximum composite likelihood method. Multiple bootstrap values at nodes are in order: NJ, MP, ME. All positions containing gaps and missing data were eliminated from the dataset. There was a total of 77 positions in the final dataset. Phylogenetic analyses were conducted in MEGA4. Clades without bootstrap values have bootstrap values of <50%. Host species are indicated after Trypanosoma species or isolate code. Genotypes sequenced during this study are shown in bold. The letters in parentheses refer to sampling locality: BI Barrow Island; FR Fitzgerald River National Park;.JI Julimar Conservation Park; DR Dryandra: FI Faure Island; PA Paruna; NSW New South Wales (see Fig. 1). Other Western Australian genotypes reported previously are indicated as WA.

Figure 4

Table 3. Isolate code and host as determined during the current investigation, with the % identity and accession details of the most similar Trypanosoma genotype registered on GenBank as determined by BLAST analysis

Figure 5

Fig. 3. Phylogram showing the relationship between Trypanosoma lewisi-like genotypes (DBA1, AMA1, BRA1 and BRA3) isolated during the current investigation and those from regions outside Australia after Hamilton et al. (2005a) inferred using the Neighbour-Joining method. The bootstrap consensus tree inferred from 100 replicates is taken to represent evolutionary history of the taxa. Branches corresponding to partitions reproduced in less than 50% bootstrap replicates are collapsed. The evolutionary distances were computed using the Maximum Composite Likelihood method and are in the units of the number of base substitutions per site. Multiple bootstrap values at nodes are in order: NJ, MP, ME. Codon positions included were 1st+2nd+3rd+Noncoding. All positions containing gaps and missing data were eliminated from the dataset (Complete Deletion option). There was a total of 444 positions in the final dataset. Phylogenetic analyses were conducted in MEGA4. Host species, isolate code and country of origin are indicated for each sequence. Genotypes sequenced during this study are shown in bold.

Figure 6

Table 4. Comparison of Trypanosoma lewisi-like nucleotide sequences obtained during this study with T. lewisi from an Indonesian bandicoot rat(Gaps and regions of alignment between each sequence and T. lewisi are shown.)