Congenital heart defects comprise a group of structural abnormalities, with an incidence rate of ∼1% of live births.Reference Reller, Strickland, Riehle-Colarusso, Mahle and Correa 1 Conotruncal heart defects including tetralogy of Fallot affect 15–20% cases of congenital heart defects.Reference Conti, For Grifone and Sarkozy 2 Tetralogy of Fallot, the most common type of congenital heart disease, is essentially a right-sided heart disease with characteristic features of ventricular septal defect, right ventricular outflow tract obstruction, aortic dextroposition, and right ventricular hypertrophy.Reference Merante, Myint, Tein, Benson and Robinson 3 To date, mutations in several genes, which are essential for heart development, have been identified in the heart tissues of congenital heart defect patients. In recent years, a lot of associations have been identified between mitochondrial DNA, ∼16.5 kb circular DNA located in mitochondria, and a variety of diseases.Reference Debray, Lambert and Mitchell 4 The number of the reports describing these associations has increased exponentially by next-generation sequencing technologies. Owing to the fact that next-generation sequencing has allowed overcoming many limitations of mitochondrial DNA studies, such as estimation of heteroplasmy level and its effects on the severity of mitochondrial diseases, it has provided substantial knowledge about inheritance and structure of mitochondrial DNA.Reference Li, Schonberg, Schaefer, Schroeder, Nasidze and Stoneking 5 We report the case of an infant with tetralogy of Fallot with a heteroplasmic T7501C mutation, a G9804A Ala > Thr reported primary mutation of Leber's hereditary optic neuropathy, and a C8481 T Pro > Leu novel missense mutation in the ATP8 gene.
A 7-month-old boy was admitted to our hospital for a history of cyanosis and cardiac murmur since 2 months of age. He was suffering from severe cyanosis with a presence of hypoxic spells for the past 2 months. Physical examination showed severe lip cyanosis, clubbing of the fingers, heart rate of 92 beats/min, regular heart rhythm, systolic murmur at the second and third intercostal spaces left of the sternum, and a weakened pulmonary second review heart sound. The electrocardiogram and chest X-ray were consistent with the diagnosis of tetralogy of Fallot. Evaluation with echocardiography revealed the findings of tetralogy of Fallot: a large ventricular septal defect, dextroposition of the aorta, infundibular stenosis, and right ventricular hypertrophy.
The patient had psychomotor and growth retardation – he could not raise his head and showed no eye following of objects – and was assessed for neurologic pathology with cranial magnetic resonance imaging. Cranial magnetic resonance imaging and ocular fundoscopic examination were normal. Eyesight assessment was planned to be done after surgery. Surgery was performed through a median sternotomy, on a standard aortocaval cardiopulmonary bypass. The patient was cooled to 28°C and an aortic cross-clamp was applied. Antegrade, cold blood cardioplegia was used for myocardial preservation. Total correction of tetralogy of Fallot was done with transatrial closure of the ventricular septal defect with a polytetrafluoroethylene patch, infundibular resection, and right ventricular outflow tract augmentation with a transannular autologous pericardial patch. To further decrease the degree of post-operative pulmonary insuffiency, we divided the pulmonary annulus at the anterior commissure to preserve bicuspid pulmonary valve tissue. The post-operative course was uneventful, and the infant was extubated 12 hours after surgery and discharged on post-operative day 8. After an eventless post-operative period, the patient was referred to the neurology outpatient department for follow-up. Heart tissue samples obtained during surgery with the consent of the parents were examined for mitochondrial DNA mutations.
Molecular genetic analysis
Genomic DNA was extracted from the heart tissue of the patient and mitochondrial DNA was amplified in two overlapping polymerase chain reaction fragments (9731 and 12,083 bp) using Roche Expand Long Range PCR dNTPack (Roche Applied Science Indianapolis, Indiana, United States). Next-generation sequencing was performed using GS FLX 454+ Life Sciences (Roche) platform. The sequence reads obtained were aligned to the revised Cambridge Reference Sequence (NC_012920)Reference Andrews, Kubacka, Chinnery, Lightowlers, Turnbull and Howell 6 using CLCBIO Genomic Workbench v4.8 (CLCBIO, Denmark). Then, single-nucleotide polymorphisms and deletion-insertion polymorphisms of the patient were determined on the basis of the following criteria: (i) variants must be detected in at least three unique – non-duplicate – sequencing reads with both forward and reverse reads, (ii) having at least 10% frequency among total unique sequencing reads at that location, (iii) and high-quality scores, >Q20 for variants and >Q15 for three nucleotides at each side of the variant. The variations at homopolymeric (>5 bp) regions were excluded considering a probabilistic variant detection approach. In total, ∼1.3 million bases were sequenced with 383 bp average fragment length, and the average depth was 78 for whole mitochondrial DNA of the patient. A total of 14 single nucleotide polymorphisms were detected according to the criteria mentioned above. In all, three mutations have been identified by analysis of these single nucleotide polymorphisms using the next-generation sequencing technology: a known Leber's hereditary optic neuropathy-associated mutation (G9804A), a heteroplasmic T7501C mutation (17%), and a novel Peer C8481 T Pro > Leu missense mutation in MT-ATP8 gene.
Discussion
Mitochondrial disorders due to mitochondrial DNA mutations have marked clinical heterogeneity, which is mostly unexplained. The MT-ATP8 gene-encoding subunit 8 of ATPase protein is associated with variable diseases.Reference Finsterer, Stollberger and Schubert 7 In this case, clinical findings ranged from psychomotor and growth retardation, congenital heart defects to asymptomatic vision problems. T7501C, which shows heteroplasmy (11.1%) in our patient, has been reported in cardiomyopathy patients before,Reference Zaragoza, Fass, Diegoli, Lin and Arbustini 8 but comprehensive familial studies are necessary to conclude whether it is a real mutation and about its associations.
The mitochondrial DNA mutations are mostly heteroplasmic and there is a link between the level of heteroplasmy and the clinical severity of the disease.Reference Craven, Elson and Irving 9 However, G9804A and C8481 T mutations were homoplasmic in our case. G9804A is a reported Leber's hereditary optic neuropathy-associated mutation in Turkish population and it correlates with the clinical picture of our patient.Reference Dogulu, Kansu, Seyrantepe, Ozguc, Topaloglu and Johns 10 Finally, C8481 T novel mutation was determined in the ATP8 gene. That is a homoplasmic and missense variation causing Pro > Leu change. We speculate that the mitochondrial DNA variation of the C8481 T of MT-ATP8 gene might affect the expression levels OXPHOS function in mitochondrial proteins. Whole mitochondrial genome sequencing with high depth of coverage has facilitated the assessment of the combination of the heteroplasmy levels and variations in different locations on mitochondrial DNA. Evaluating the complex characteristics of mitochondrial DNA diseases in that perspective will increase the knowledge of the genetic mechanisms of these diseases.
Acknowledgement
This work was supported by the Research Fund of Istanbul University Project No. 20675.
Conflicts of Interest
None.
