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Millet research status and prospects for alleviating food insecurity through a text-mining approach

Published online by Cambridge University Press:  07 December 2023

Jagajjit Sahu
Affiliation:
Division for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
Tilak Chandra
Affiliation:
Division for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
Sarika Jaiswal
Affiliation:
Division for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
Mir Asif Iquebal*
Affiliation:
Division for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
Dinesh Kumar
Affiliation:
Division for Agricultural Bioinformatics, ICAR-Indian Agricultural Statistics Research Institute, New Delhi, India
*
Corresponding author: Mir Asif Iquebal; Email: ma.iquebal@icar.gov.in
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Abstract

In view of the celebration of the ‘International Year of Millets,’ millets are popularizing sustainable agricultural output amid challenging climates and nourishing adequately as food and feed. The extent of scientific intervention is the foundation for designing, promoting and popularizing neglected crops on social platforms. Planning future directions and adaptive strategies largely require regular evaluation of research efforts to identify hotspots and research gaps, as identified in the present study by creating a robust text-mining approach that integrates scientometrics using PubMed citation data. Keyword mining reveals that India and China are the leading publication centres on millets, possibly due to their large proportion of cultivation and indigenous nature. It further reveals that the pearl millet is the predominant one, followed by foxtail and finger millet, suggesting that most research is confined to them only; however, other millets, still have a research gap in comparison. The word abiotic stress is associated with high frequency in millet research due to its adaptive nature amid climate change. Thematic representation explored the novel concept of millet's utility as a probiotic and millet bran to ensure nutrient–cereal properties based on the persistency of keywords throughput research progression; however, incurious consumption is associated with harmful ochratoxin. Bio-concept mining and knowledge graph generation divided the millet research output into four large domains, which provides a largely covered bio-concepts for millet research and co-concurrence of emerging bio-concepts to intense progress and finds an adequate literature gap to improve millet research for sustained growth and equilibrate biodiversity.

Information

Type
Climate Change and Agriculture Research Paper
Copyright
Copyright © The Author(s), 2023. Published by Cambridge University Press
Figure 0

Table 1. Basic keywords information obtained from the citation data extracted from ‘PubMed’ after searching the keywords ‘Millet’

Figure 1

Figure 1. Year-wise publication trend on millet research to generate frequencies-based flow analysis. The frequencies were divided by thousand. Before 1971, a minimal pattern of publication was noticed, and throughout the last few decades, the trends have increased significantly.

Figure 2

Figure 2. Country productivity with respect to the PubMed reports (a) Article frequencies against the top ten countries plotted as a bar plot (b) Publications of the same top ten countries evolved across the years. (c) A network depicting the country's collaboration as of 2022. The node size is directly proportional to the degree.

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Figure 3. (a) Frequent keywords and their distribution across years. (b) Interconnected keywords based on their co-occurrence in the same articles. A timeline was also prepared for the keywords across years to have a look at the frequent keywords across individual years as well as a whole (Fig. 4).

Figure 4

Figure 4. A word cloud representing the frequencies with the help of font size. These may contain partial keywords as only single word tokens have been considered to build the cloud.

Figure 5

Figure 5. A Sankey plot to depict the evolution of keyword-based themes across different decades. The clusters are of different colours, but individual clusters are of the same colour across all six year ranges. The names of the clusters are basically the most frequent keywords in that cluster.

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Table 2. Distribution statistics for bio-concepts across the ten classes' coverage reveals keyword cell line, chemical, chromosome, disease, DNA mutation, gene, protein acid change, protein mutation, RefSeq and species

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Figure 6. The top most frequent bio-concepts for the four important classes, which are chemical, disease, gene and species. The major compounds comes under chemical bio concept are iron, water, starch carbon and nitrogen. Similarly, under disease bio concept, the keyword stress, infection diabetes cancer and myotonic dystrophy (MD). For frequency-based gene bio concept, TNF-α, ml-1, Adh1, hBD-2 and IgE, respectively. The frequency of bio concept on species level provides the keyword millet (MI), foxtail millet (FM), pearl millet (PM), sorghum and human.

Figure 8

Figure 7. A network representation of co-occurring top bio-concepts. Bio-concepts present in a single PubMed record are connected with edges to form the network, and then the sub-graph was created by considering only the top five bio-concepts falling under four classes, which are chemical, disease, gene and species.