Hostname: page-component-74656f9884-skzmx Total loading time: 0 Render date: 2026-11-04T08:33:01.346Z Has data issue: false hasContentIssue false

The importance of integrative approaches in nematode taxonomy: the validity of Parapharyngodon and Thelandros as distinct genera

Published online by Cambridge University Press:  20 September 2018

A. De Sousa
Affiliation:
CIBIO/ InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus de Vairão, 4485-661 Vairão, Portugal
F. Jorge
Affiliation:
Department of Zoology, University of Otago, 340 Great King Street, PO Box 56, Dunedin 9054, New Zealand
M.A. Carretero
Affiliation:
CIBIO/ InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus de Vairão, 4485-661 Vairão, Portugal
D.J. Harris
Affiliation:
CIBIO/ InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus de Vairão, 4485-661 Vairão, Portugal Departamento de Biologia, Faculdade de Ciências, Universidade do Porto, Rua Campo Alegre, 4169-007, Porto, Portugal
V. Roca
Affiliation:
Departament de Zoologia, Facultat de Ciències Biològiques, Universitat de València. Dr. Moliner, 50, 46100 Burjassot, Spain
A. Perera*
Affiliation:
CIBIO/ InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Campus de Vairão, 4485-661 Vairão, Portugal
*
Author for correspondence: A. Perera, E-mail: perera@cibio.up.pt
Rights & Permissions [Opens in a new window]

Abstract

Despite the advances of molecular tools, new nematode species are still described mainly based on morphological characters. Parapharyngodon and Thelandros are two genera of oxyurids with unclear related taxonomic histories. Here we use morphological characters (linear measurements and categorical variables) and genetic information (18S rRNA, 28S rRNA and COI partial gene sequences) to confirm the relationships between representatives of these two genera and to determine whether they can be discriminated morphologically. Genetic results confirm the existence of two main clades, mostly congruent with Parapharyngodon and Thelandros genera but with several discordances. Thelandros is polyphyletic, with two of the species analysed (T. filiformis and T. tinerfensis) being part of the Thelandros clade, but with a third one (T. galloti) falling within the Parapharyngodon clade. Regarding the Parapharyngodon clade, P. cubensis, P. scleratus and Parapharyngodon sp. from Mexico form congruent lineages, while most P. echinatus samples cluster in another group, with one exception. Interestingly, P. micipsae samples are scattered across the Parapharyngodon clade, suggesting that they were misidentified or rather represent alternative morphotypes of other species. Morphological analysis identified the length of the tail, number of caudal papillae, position of the nerve ring, presence of caudal alae and length of the lateral alae as reliable characters to distinguish between Parapharyngodon and Thelandros genetic clades. Our study highlights the current taxonomic inconsistency in these groups, mainly derived from the exclusive use of morphological data. As such, we advocate for the routine implementation of molecular data in nematode taxonomic studies.

Information

Type
Research Paper
Copyright
Copyright © Cambridge University Press 2018 
Figure 0

Table 1. List of the individuals included in the study. For each sample, species (identified by morphology), host, locality, country, genetic (clade, GenBank accession numbers) and morphological information (used in the morphological assessment, sex), and the reference are given.

Figure 1

Table 2. Description of the main characters used to identify morphologically the species of Parapharyngodon and Thelandros included in the study.

Figure 2

Table 3. Primers and PCR conditions used to amplify the gene fragments targeted in this study.

Figure 3

Fig. 1. Phylogenetic tree depicting the relationships between Parapharyngodon and Thelandros samples using the 18S + 28S + COI concatenated dataset. The topology of the tree corresponds to a Bayesian inference (BI) 50% majority-rule consensus tree, and support values for the main lineages represent Bayesian posterior probabilities above 0.70. Sequences generated in this study are highlighted in bold. Additional information regarding sample codes is in table 1.

Figure 4

Fig. 2. Principal component analysis (PCA) plots for the morphological variation in Parapharyngodon and Thelandros males (left) and females (right). Values in parentheses in the axis labels correspond to the eigenvalues and to the amount of variation (%) explained for each principal component. Individuals are colour-coded by genetic clade (Parapharyngodon clade in grey, Thelandros clade in black), and different lineages are shape-coded: P. echinatus (grey square), T. galloti (grey circle), T. filiformis (black square) and T. tinerfensis (black circle). Given that P. micipsae individuals were scattered across both P. echinatus and T. galloti lineages, they are also highlighted in a different shape (grey triangle).

Figure 5

Table 4. Results of the permANOVA/permANCOVA analyses on male body measurements. Significant p-values are in bold. Asterisk indicates the variables correlated to body length and for which ANCOVA analyses were performed. BL, body length; BW, width at mid-body region; LAL, lateral alae length; LAW, lateral alae width; NR, nerve ring distance to the mouth; OBL, oesophageal bulb length; OBW, oesophageal bulb width; OL, oesophagus length; OW, oesophagus width; SPI, spicule length; SW, spicule width; TL, tail length; TW1, tail width above the tail papillae pair; TW2, tail width below the tail papillae pair.

Figure 6

Fig. 3. Frequency plots (number of individuals) of male categorical variables between the main lineages of Parapharyngodon and Thelandros.

Supplementary material: PDF

De Sousa et al. supplementary material

De Sousa et al. supplementary material 1

Download De Sousa et al. supplementary material(PDF)
PDF 2.3 MB