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Identification of 18 vector species belonging to Group I, Group II, and Group III ‘Dirty 22’ species known to contaminate food and spread foodborne pathogens: DNA barcoding study of public health importance

Published online by Cambridge University Press:  12 December 2016

Irshad M. Sulaiman*
Affiliation:
Microbiological Sciences Branch, South Regional Laboratory, US Food and Drug Administration, 60, Eight Street, Atlanta, Georgia, 30309, USA
Emily Jacobs
Affiliation:
Microbiological Sciences Branch, South Regional Laboratory, US Food and Drug Administration, 60, Eight Street, Atlanta, Georgia, 30309, USA
Steven Simpson
Affiliation:
Microbiological Sciences Branch, South Regional Laboratory, US Food and Drug Administration, 60, Eight Street, Atlanta, Georgia, 30309, USA
Khalil Kerdahi
Affiliation:
Microbiological Sciences Branch, South Regional Laboratory, US Food and Drug Administration, 60, Eight Street, Atlanta, Georgia, 30309, USA

Abstract

The US Food and Drug Administration (US-FDA) uses the presence of filth and extraneous materials as one of the criteria in implementing regulatory actions and assessing food adulteration of public health importance. So far, 22 common pest species (‘Dirty 22’ species) have been considered by this agency for the spreading of foodborne illness, and their presence is an indicator of unsanitary conditions in food processing and storage facilities. Recently, we classified the ‘Dirty 22’ species into four groups: Group I (four cockroach species), Group II (two ant species), Group III (12 fly species), and Group IV (four rodent species), and described two molecular diagnostic methods for group-specific identification. We developed a PCR-RFLP assay based on rRNA gene for the detection and differentiation of Group I ‘Dirty 22’ species. Later, we designed three Group II ‘Dirty 22’ species-specific nested PCR primer sets and sequence characterized the rRNA, elongation factor 1-alpha (EF-1a), and wingless (WNT-1) loci. In this follow-up study, we have evaluated the robustness of five unique sets of published primers targeting the mitochondrial cytochrome oxidase I (COI) gene for insect barcoding. With modified PCR conditions, we successfully used COI barcoding for 18 members of Group I, Group II, and Group III ‘Dirty 22’ species. Results of this study reveal that COI barcoding is an effective tool for rapid identification of insects of Groups I, II, and III ‘Dirty 22’ species known to contaminate food and spread foodborne pathogens.

Information

Type
Research Paper
Copyright
Copyright © icipe 2016 
Figure 0

Table 1. Cytochrome c oxidase subunit I (COI) gene barcoding data from this study on 18 insect pests belonging to Groups I, II, and III ‘Dirty 22’ species

Figure 1

Table 2. Cytochrome c oxidase subunit I (COI) gene barcoding primers used in this study

Figure 2

Fig. 1. Phylogenetic relationships among 18 insect species belonging to the Group I, Group II, and Group III ‘Dirty 22’ species inferred from neighbour-joining analysis of cytochrome c oxidase subunit I (COI) nucleotide sequences. The numbers at the branch points represent the percentage of replicants (bootstrap support) for which the same branching patterns were obtained.

Figure 3

Table 3. Genetic distances of the cytochrome c oxidase subunit I (COI) barcoding sequences of 18 insect species of the ‘Dirty 22’ Groups I, II, and III