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The use of novel phenotyping methods for validation of equine conformation scoring results

Published online by Cambridge University Press:  13 January 2015

T. Druml*
Affiliation:
Institute of Animal Breeding and Genetics, Veterinary University Vienna, Veterinärplatz 1, 1220 Vienna, Austria
M. Dobretsberger
Affiliation:
Institute of Animal Breeding and Genetics, Veterinary University Vienna, Veterinärplatz 1, 1220 Vienna, Austria
G. Brem
Affiliation:
Institute of Animal Breeding and Genetics, Veterinary University Vienna, Veterinärplatz 1, 1220 Vienna, Austria

Abstract

In this experiment, which is based on a cohort of 44 Lipizzan mares from the Austrian state stud farm of Piber, we present new statistical techniques for the analysis of shape and equine conformation using image data. In addition, we examined which strategies and procedures of image processing techniques led to a successful interpretation of the traits implemented in horse breeding programs. A total of 246 two-dimensional anatomical and somatometric landmarks were digitized from standardized photographs, and the variation of shape has been analyzed by the use of generalized orthogonal least-squares Procrustes (generalized Procrustes analysis (GPA)) procedures. The resulting shape variables have been regressed on the results from linear type trait classifications. In addition, the rating scores of six conformation classifiers were tested for agreement, yielding an inter-rater correlation (inter-class correlation) ranging from 0.41 to 0.68, respectively, a κ coefficient ranging from 0.16 to 0.53. From the 12 linear type traits assessed on a valuating scale, only the type-related traits (type, breed-type and harmony) revealed significant (P<0.05) results in the regression analysis of shape variables on linear type traits. The other nine traits were characterized by a lower agreement between classifiers and did not result in a significant ‘shape regression’. Finally, the ‘horse shape space’ defined by shape variables resulting from GPA procedures offered the possibility to assist in trait definition and in the evaluation of ratings, and it is an adequate biological and objective scale to human perception of conformation, which is expressed in numerical data only.

Information

Type
Research Article
Copyright
© The Animal Consortium 2015 
Figure 0

Figure 1 Digitized dataset (somatometric ‘horse model’, test data) before applying the Procrustes fit (on the left) and optimal superimposed specimens of unit size and minimum distance to the sample mean (on the right).

Figure 1

Table 1 Mean values (from 263 observations: 44 animals, six classifiers, one classifier missed one animal), minimum, maximum values, standard deviations and range for 12 trait descriptors evaluated by six classifiers using a scale of 10 points by one unit increase

Figure 2

Table 2 Multiple comparisons of means by classifier per trait and κ values per trait (44 scores/classifier and trait, except for classifier 1, who had 43 scores, in total 263 scores/trait)

Figure 3

Figure 2 The somatometric ‘horse model’ at the left and the outline ‘horse model’ used for this study on the right.

Figure 4

Table 3 Classifier uniformity between the six raters in all traits and horses (3156 scores in total, 528 scores/classifier – 12 traits×44 horses, except for classifier 1, who had 516 scores), represented by κ coefficients plus standard error and inter-correlation coefficient (ICC) adjusted to Spearman

Figure 5

Figure 3 Aligned, scaled and unit sized configurations of 44 Lipizzan mares on the left, the resulting mean configuration, the mean Piber mare, at the right.

Figure 6

Figure 4 PCA of partial warp scores based on the data pool of 44 Lipizzan horses. Shape changes are shown along PCA axes 1, 2 and 3, which account for 67% of shape variation within this sample of mares from the Austrian stud farm of Piber. PCA=principle component analysis.

Figure 7

Figure 5 Female Lipizzan horse shape changes according to the valuating score sheet based on the full horse model. The consensus is deformed to a target configuration of score 4, respectively, 10 points. Shape changes between type and breed-type were highly similar; therefore, the graphical representation for the trait descriptor breed-type is not shown here.

Figure 8

Table 4 Significance levels of regressions of shape models onto ratings, percentage of variation explained by the regression, significance level of the regression and κ coefficients (all classifiers) of rating data, within the sample of 44 Lipizzan mares

Figure 9

Figure 6 Shape regressions of the trait breed-type of two significantly (P<0.05) differing raters. Their ratings are plotted onto the shape space of PC 2 and PC 4 (compare with Figure 4). Orange=score 7; green=score 8; blue=score 9; and red=score 6. Ellipsoids are chosen for better visualization of ratings and contain 75% of the data. PC=principal component.

Supplementary material: PDF

Druml supplementary material

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