Hostname: page-component-74656f9884-2dmjx Total loading time: 0 Render date: 2026-11-07T22:00:26.274Z Has data issue: false hasContentIssue false

DNA barcoding of common soft scales (Hemiptera: Coccoidea: Coccidae) in China

Published online by Cambridge University Press:  20 May 2015

X.-B. Wang
Affiliation:
The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing 100083, China Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
J. Deng
Affiliation:
The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing 100083, China
J.-T. Zhang
Affiliation:
The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing 100083, China
Q.-S. Zhou
Affiliation:
Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
Y.-Z. Zhang*
Affiliation:
Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China
S.-A. Wu*
Affiliation:
The Key Laboratory for Silviculture and Conservation of Ministry of Education, Beijing Forestry University, Beijing 100083, China
*
* Authors for correspondence Phone: Fax: 86-10-62336596 (S.-A.W), 86-10-64807099 (Y.-Z.Z) E-mail: sananwu@bjfu.edu.cn, zhangyz@ioz.ac.cn
* Authors for correspondence Phone: Fax: 86-10-62336596 (S.-A.W), 86-10-64807099 (Y.-Z.Z) E-mail: sananwu@bjfu.edu.cn, zhangyz@ioz.ac.cn
Rights & Permissions [Opens in a new window]

Abstract

The soft scales (Hemiptera: Coccoidea: Coccidae) are a group of sap-sucking plant parasites, many of which are notorious agricultural pests. The quarantine and economic importance of soft scales necessitates rapid and reliable identification of these taxa. Nucleotide sequences of the mitochondrial cytochrome c oxidase subunit I (COI) gene (barcoding region) and 28S rDNA were generated from 340 individuals of 36 common soft scales in China. Distance-based [(best match, Automated Barcode Gap Discovery (ABGD)], tree-based (neighbor-joining, Bayesian inference), Klee diagrams, and general mixed Yule coalescent (GMYC) models were used to evaluate barcoding success rates in the data set. Best match showed that COI and 28S sequences could provide 100 and 95.52% correct identification, respectively. The average interspecific divergences were 19.81% for COI data and 20.38% for 28S data, and mean intraspecific divergences were 0.56 and 0.07%, respectively. For COI data, multiple methods (ABGD, Klee, and tree-based methods) resulted in general congruence with morphological identifications. However, GMYC analysis tended to provide more molecular operational taxonomic units (MOTUs). Twelve MOTUs derived from five morphospecies (Rhodococcus sariuoni, Pulvinaria vitis, Pulvinaria aurantii, Parasaissetia nigra, and Ceroplastes rubens) were observed using the GMYC approach. In addition, tree-based methods showed that 28S sequences could be used for species-level identification (except for Ceroplastes ceriferus – Ceroplastes pseudoceriferus), even with low genetic variation (<1%). This report demonstrates the robustness of DNA barcoding for species discrimination of soft scales with two molecular markers (COI and 28S) and provides a reliable barcode library and rapid diagnostic tool for common soft scales in China.

Information

Type
Research Papers
Copyright
Copyright © Cambridge University Press 2015 
Figure 0

Fig. 1. Overview of geographic distribution of soft scales analyzed in this study. Collection sites are labeled with red circle. Materials from 26 provinces are concluded.

Figure 1

Fig. 2. Frequency distribution histogram of genetic distances based on 332 COI sequences for 36 soft scale species in China. The intraspecific and interspecific K2P distances are displayed using gray and black columns, respectively.

Figure 2

Table 1. K2P distance information about 21 species with intraspecific divergence >0 and eight genera with multiple species.

Figure 3

Fig. 3. Automatic partitions generated by ABGD using COI data set. Abscissa is the value of prior intraspecific divergence, while ordinate is the number of groups produced by ABGD.

Figure 4

Fig. 4. Sequence clusters of 36 common soft scales in China according to the COI data set. (a) BT based on 83 haplotypes with posterior probabilities (>0.5) indicated next to each node. The 36 morphospecies are represented each by a monophyletic clade with scientific names at the tip of clade. Subclades in red refer to 12 GMYC entities in five morphospecies. (b) Klee diagrams of the 332 COI sequences (y-axis) showing the correlations among indicator vectors for the 36 soft scale species (x-axis). Sequences cluster as blocks with high correlation along the diagonal, corresponding to 36 morphospecies (the numbers beside blocks accord with those in fig. 4a and refer to the five species with multiple GMYC entities). In case of C. ceriferus and C. pseudoceriferus, magnifying Klee diagrams, along with their photographs, are showed below.

Figure 5

Fig. 5. Bayesian 28S gene tree of tested coccid species from 60 haplotypes. Nipponaclerda biwakoensis (Hemiptera: Aclerdiae) is chosen as the outgroup. Posterior probability for each haplogroup is shown near to the node. Values <50% are hidden.

Supplementary material: PDF

Wang supplementary material

Figures S1-S5

Download Wang supplementary material(PDF)
PDF 2.1 MB
Supplementary material: PDF

Wang supplementary material

Table S1

Download Wang supplementary material(PDF)
PDF 220.4 KB