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Revealing protein dynamics with high-pressure NMR

Published online by Cambridge University Press:  26 February 2026

Julien Roche
Affiliation:
Roy J. Carver Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, USA
Christian Roumestand
Affiliation:
Centre de Biologie Structurale, INSERM U1054, CNRS UMMR 5058, Université de Montpellier, France
Catherine A. Royer*
Affiliation:
Department of Biological Sciences, Rensselaer Polytechnic Institute, USA
*
Corresponding author: Catherine A. Royer; Email: royerc@rpi.edu
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Abstract

While the structure of proteins can now be predicted from sequence with high certainty, the prediction of protein functional dynamics remains to be achieved. Progress towards this goal will require a much larger experimental database of the relationships among sequence, dynamics, and function than currently available. Dynamic transitions that are key to protein function and turnover remain difficult to access and characterize because they have significantly higher free energy than the folded states of proteins and hence are not populated. To access these higher free energy states, proteins must be perturbed. High temperatures often lead to aggregation, while chemical denaturants, because they interact with the entire protein backbone, tend to smooth protein conformational landscapes. In contrast, high hydrostatic pressure represents a continuous and reversible variable that can perturb protein structure locally around internal cavities, leading to partial structural disruption, populating these higher energy states sufficiently for their characterization.

Information

Type
Review
Copyright
© The Author(s), 2026. Published by Cambridge University Press
Figure 0

Figure 1. Volumetric diagram of protein folding reactions. (a) The volume diagram for the unfolding/folding reaction of staphylococcal nuclease (redrawn from Mitra et al., 2007) indicating the overall volume change between the folded and unfolded states ΔVF (−75 ml/mol) and its decomposition into the activation volume for folding, ΔV#F, (+65 ml/mol) and the activation volume for unfolding, ΔV#U, (−10 ml/mol). (b) Temperature dependence of the volume diagram for the unfolding/folding reaction of the ankyrin repeat domain of the Notch receptor protein (redrawn from Rouget et al., 2011). Equilibrium volume changes, ΔVF, are green, activation volumes for folding, ΔV#F, are red, and activation volumes for unfolding, ΔV#U, are blue. Note that the ΔV#U is negative at low temperature and positive at high temperature due to the differences in thermal expansion of the folded state, αF, with respect to the transition, αT, and unfolded, αU, states.

Figure 1

Figure 2. Volume of activation and protein dynamics. Schematic representation of the relative volume of activation associated with different ranges of protein motion. On the left, backbone N–H bond vibrations occur on the picosecond to nanosecond timescale and exhibit near-zero activation volumes, reflecting their insensitivity to hydrostatic pressure. Methyl side-chain dynamics typically occur on nanosecond to microsecond timescales and display modestly larger activation volumes, indicative of localized compressibility within the protein core. In contrast, aromatic side-chain rotations, which take place on microsecond to millisecond timescales, can involve substantially larger activation volumes (on the order of 10–15 mL mol−1), resulting in pronounced pressure effects.

Figure 2

Figure 3. High-pressure NMR methods for probing protein conformational exchange and folding kinetics. Schematic representation of how different high-pressure NMR approaches access distinct regions of the protein energy landscape. Local conformational exchange within the folded ensemble (F ↔ I) can be characterized using 15N CPMG relaxation dispersion and CEST experiments, which provide rate constants and populations of excited states. In contrast, real-time pressure-jump experiments – performed manually for slow transitions or using ultra-fast instrumentation for rapid events – along with ZZ-exchange spectroscopy, enable direct measurement of folding and unfolding kinetics (F ↔ U). Pressure shifts the free energy surface, stabilizing lower-volume states and altering the relative barriers between folded (F), intermediate (I), transition (T), and unfolded (U) states.

Figure 3

Figure 4. Real-time 1H pressure-jump unfolding kinetics of the DEN4-ED3 domain from the Dengue virus protein envelope. (a) Time evolution of the unfolded-state methyl resonance intensity following a series of positive 200-bar pressure-jumps conducted between 700 and 2500 bar. The pressures indicated on the right correspond to the final pressures reached after each jump (e.g., “700 bar” represents a jump from 500 to 700 bar). (b) Chevron plot of the logarithm of the observed exchange times [ln(τ)] as a function of pressure, used to extract the global folding and unfolding rate constants (kF and kU), as well as the apparent activation volume of folding (ΔV#F). Data adapted from Herrada et al. (2018).