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Assessment of genetic diversity of Guizotia abyssinica (L.f.) Cass. (Asteraceae) from Ethiopia using amplified fragment length polymorphism

Published online by Cambridge University Press:  01 April 2008

Mulatu Geleta*
Affiliation:
Department of Plant Protection Biology, Swedish University of Agricultural Sciences, PO Box 44, SE 230 53 Alnarp, Sweden Department of Biology, Addis Ababa University, PO Box 1176, Addis Ababa, Ethiopia
Tomas Bryngelsson
Affiliation:
Department of Plant Protection Biology, Swedish University of Agricultural Sciences, PO Box 44, SE 230 53 Alnarp, Sweden
Endashaw Bekele
Affiliation:
Department of Biology, Addis Ababa University, PO Box 1176, Addis Ababa, Ethiopia
Kifle Dagne
Affiliation:
Department of Biology, Addis Ababa University, PO Box 1176, Addis Ababa, Ethiopia
*
*Corresponding author. E-mail: gemulat@yahoo.com; E-mail: Mulatu.Geleta.Dida@ltj.slu.se
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Abstract

Seventeen populations of niger (Guizotia abyssinica), representing all regions in Ethiopia where this crop is grown, were investigated using the amplified fragment length polymorphism (AFLP) technique, in order to determine the extent and distribution of its genetic diversity. A total of 539 AFLP loci were scored using seven primer combinations applied to 170 individual plants. Of these, 90% were polymorphic and all the individuals investigated were genetically unique. Despite the fact that most of the variation was within populations, populations were differentiated at a significant level (analysis of molecular variance; P < 0.001). There were no significant differences between populations in relation to the extent and altitude of cultivation. A significant positive correlation was revealed between Nei's standard genetic distance and geographic distance. Cluster analysis and principal coordinate analysis revealed that populations from the same regions were clustered together in most cases. Further collection of niger germplasm from areas underrepresented in gene bank collections is recommended.

Information

Type
Research Article
Copyright
Copyright © NIAB 2008
Figure 0

Fig. 1 The collection sites of the niger populations used in this study.

Figure 1

Table 1 Population codes, geographic description, number of polymorphic loci (NPL), percentage polymorphic loci (PPL), number of unique alleles (NUA), mean frequency of unique alleles (MFUA), H _{loci}^{\prime } and Hj for the populations of G. abyssinica

Figure 2

Table 2 Summary of number of bands scored (NBS), number of polymorphic loci (NPL), percentage polymorphic loci (PPL), number of unique alleles (NUA), mean frequency of unique alleles (MFUA), various Shannon and gene diversity parameters estimates and AMOVA for seven AFLP primer combinations (PCs) and their corresponding means and total

Figure 3

Fig. 2 Amplified fragment length polymorphism profiles generated by primer combination E-ACA/M-CTA for three populations. M, Molecular size marker; individuals of Wl-1, Wl-2 and I-1 populations are represented in lanes 1–10, 11–20 and 21–30, respectively.

Figure 4

Table 3 AMOVA for the 17 populations of G. abyssinica based on AFLP data: (A) without grouping the populations; (B) by grouping the populations into those from (i) minor niger-producing regions (MiNPR) and (ii) major niger-producing regions (MaNPR); (C) by grouping the populations into (i) higher and (ii) lower altitude groups; and (D) by grouping the populations into five groups based on geographic proximity and access to gene flow

Figure 5

Fig. 3 (a) UPGMA phenogram of the 17 populations of niger based on Nei's (1972) standard genetic distance, estimated from amplified fragment length polymorphism (AFLP) profiles. (b) Two-dimensional plot generated by principal coordinate analysis.