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Exchangeable and sampling-consistent distributions on rooted binary trees

Published online by Cambridge University Press:  14 January 2022

Benjamin Hollering*
Affiliation:
North Carolina State University
Seth Sullivant*
Affiliation:
North Carolina State University
*
*Postal address: North Carolina State University, Department of Mathematics, Box 8205, Raleigh, NC 27695, USA.
*Postal address: North Carolina State University, Department of Mathematics, Box 8205, Raleigh, NC 27695, USA.
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Abstract

We introduce a notion of finite sampling consistency for phylogenetic trees and show that the set of finitely sampling-consistent and exchangeable distributions on n-leaf phylogenetic trees is a polytope. We use this polytope to show that the set of all exchangeable and sampling-consistent distributions on four-leaf phylogenetic trees is exactly Aldous’ beta-splitting model, and give a description of some of the vertices for the polytope of distributions on five leaves. We also introduce a new semialgebraic set of exchangeable and sampling consistent models we call the multinomial model and use it to characterize the set of exchangeable and sampling-consistent distributions. Using this new model, we obtain a finite de Finetti-type theorem for rooted binary trees in the style of Diaconis’ theorem on finite exchangeable sequences.

Information

Type
Original Article
Copyright
© The Author(s), 2022. Published by Cambridge University Press on behalf of Applied Probability Trust
Figure 0

Figure 1. The projection of $\mathcal{E}_5^7$ onto the first two coordinates of the simplex $\mathcal{E}_5$. The gray points correspond to the points $\pi_n(p_T)$ for $T \in \textrm{RB}_\textrm{U}(7)$. The vertices of the simplex are labelled with the corresponding unrooted tree. Note that the balanced tree is at the origin since we’ve projected onto the coordinates corresponding to the other two trees.

Figure 1

Figure 2. (a) A five-leaf tree. (b) The two tree shapes for four-leaf trees.

Figure 2

Figure 3. (a) T; (b) $\tilde{T}$; (c) $\textrm{Bal}_5$.

Figure 3

Figure 4. This is a projection onto the first two coordinates of the simplex $\mathcal{E}_5$. The beta-splitting model on $\textrm{RB}_\textrm{U}(5)$ is pictured in black, and the multinomial model on the two-leaf tree is pictured in gray.

Figure 4

Figure 5. Tree shapes on five leaves.

Figure 5

Figure 6. The two trees from the proof of Lemma 5.2. Note that $T_0$ denotes all of the part of the tree that lies above the vertex z.

Figure 6

Figure 7. (a) T; (b) $\textrm{T}^{\prime}$.

Figure 7

Figure 8. The multinomial model on the two-leaf tree is in gray and the $\beta$-splitting model is the thick black curve. The thinner black lines are the boundary of $\mathcal{E}_5^n$ for $n=5,6,9,12$.