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Indirect estimates reveal the potential of transgene flow in the crop–wild–weed Sorghum bicolor complex in its centre of origin, Ethiopia

Published online by Cambridge University Press:  13 June 2016

Asfaw Adugna*
Affiliation:
Melkassa Agricultural Research Center, P.O. Box 1085, Adama, Ethiopia Department of Microbial, Cellular and Molecular Biology, Addis Ababa University, P.O. Box 1176, Addis Ababa, Ethiopia
Endashaw Bekele
Affiliation:
Department of Microbial, Cellular and Molecular Biology, Addis Ababa University, P.O. Box 1176, Addis Ababa, Ethiopia
*
*Corresponding author. E-mail: asfaw123@rediffmail.com
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Abstract

A study was carried out between 2008 and 2011 to investigate the potential risks of gene flow and its consequences in the crop–wild–weed S. bicolor complex in Ethiopia to aid efforts to conserve genetic diversity. Morphological measurements and genomic DNA samples were taken in situ from 30 wild and eight cultivated populations representing a total of 760 samples from five regions. Genetic diversity, gene flow, population structure and outcrossing rates of wild populations were computed using phenotypic measurements and/or polymorphic simple sequence repeat (SSR) markers. Moreover, morphological analyses of fitness of crop–wild hybrids were studied. High diversity was observed among the wild/weedy sorghum populations for phenotypic traits and SSRs. SSR diversity was high in both wild and cultivated populations, but the magnitude was greater in the former. Gene flow between the wild and the cultivated sorghum was observed to be higher than that within either pool. Wild sorghums exhibited variation in the multilocus outcrossing rate (range = 0.31–0.65) and fitness was not compromised in most wild × crop hybrids. The study indicated that crop-to-wild gene flow is possible in Ethiopia. Thus, genes from transgenic sorghum are expected to enter into the wild and non-transgenic cultivated populations and may spread and persist, if transgenic sorghum is deployed in Ethiopia and in other countries of Africa, which may pose risk of introduction of unwanted effects, which in turn may lead to loss of genetic diversity.

Information

Type
Research Article
Copyright
Copyright © NIAB 2016 
Figure 0

Fig. 1. UPGMA clustering of wild and cultivated sorghum populations from three geographical regions (represented by three outer colour ranges) where they co-occur (internal clades and nodes, Green = cultivated, Blue = wild).

Figure 1

Fig. 2. STRUCTURE bar graph of the 12 wild and eight cultivated sorghum populations at k = 5. Wild populations: W1–W3 Gibe, W4–W7 Pawe, W8–W12 Wollo. Cultivated populations: C1–C2 Gibe, C3–C4 Pawe, C5–C8 Wollo (see online Supplementary Table S1). In the bar graph, each individual plant is represented by a single line, which has one or more colours, depending on whether it shared alleles or not with other individuals in the populations.

Figure 2

Table 1. Global AMOVA among wild populations and among cultivated populations collected from three regions, and between the wild and cultivated groups as a weighted average over loci

Figure 3

Table 2. Matrix representing the number of migrants per generation (Nm) as an indirect measure of gene flow among wild, among cultivar and among crop–wild populations (W stands for wild and C for cultivar). Nm values of ≥1 are in boldface.

Figure 4

Table 3. Regional crop–wild sorghum gene flow estimated from the number of migrants per generation (Nm)

Supplementary material: File

Adugna and Bekele supplementary material

Tables S1-S2 and Figure S1

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