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Characterization of Oesophagostomum asperum and O. columbianum by internal transcribed spacers of nuclear ribosomal DNA

Published online by Cambridge University Press:  30 November 2012

G.H. Zhao
Affiliation:
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province712100, PR China
B. Hu
Affiliation:
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province712100, PR China
J.K. Song
Affiliation:
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province712100, PR China
Y.Q. Jia
Affiliation:
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province712100, PR China
H.M. Li
Affiliation:
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province712100, PR China
C.R. Wang
Affiliation:
College of Animal Science and Veterinary Medicine, Heilongjiang Bayi Agricultural University, Daqing, Heilongjiang Province163319, PR China
Q. Lin
Affiliation:
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province712100, PR China
Q.X. Xu
Affiliation:
Guangdong Entry-Exit Inspection and Quarantine Bureau, Guangzhou, Guangdong Province510470, PR China
S.K. Yu*
Affiliation:
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi Province712100, PR China
Y. Deng*
Affiliation:
Guangzhou Airport Entry-Exit Inspection and Quarantine Bureau, Guangzhou, Guangdong Province510470, PR China
*
*Fax: +86-29-87081762. E-mails: yusanke15@sohu.com (S.K. Yu); dengyan_2003@126.com (Y. Deng)
*Fax: +86-29-87081762. E-mails: yusanke15@sohu.com (S.K. Yu); dengyan_2003@126.com (Y. Deng)
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Abstract

In the present study, the internal transcribed spacers (ITS) of ribosomal DNA (rDNA) of Oesophagostomum asperum and O. columbianum were amplified and sequenced. The ITS-1, 5.8S and ITS-2 rDNA sequences of O. asperum were 374 bp, 153 bp and 259 bp in length, respectively, and the corresponding sequences of O. columbianum were 259, 153 and 218 bp in length, respectively. Sequence differences in the ITS-1 and ITS-2 rDNA between the two Oesophagostomum species were 9.5–10.2% and 12.7–13.9%, respectively. Sequence differences in the ITS-1 and ITS-2 rDNA among members of the genus Oesophagostomum were 2.5–11.6% and 6.8–22.3%, respectively. Based on genetic markers in the ITS rDNA, an effective polymerase chain reaction (PCR) approach was developed to differentiate O. columbianum from O. asperum with a sensitivity of 0.2 ng/μl DNA. Since accurate characterization of parasites at different taxonomic levels is essential for population genetic studies and control of parasitosis, the present findings have important implications for studying epidemiology, taxonomy and population biology, as well as for the control of oesophagostomiasis.

Information

Type
Research Papers
Copyright
Copyright © Cambridge University Press 2012 
Figure 0

Table 1Geographical origins and genders of nematode samples used in the present study, as well as their GenBank™ accession numbers for sequences of the internal transcribed spacer of nuclear ribosomal DNA.

Figure 1

Fig. 1The main morphological differences of the anterior end: (A) O. asperum; (B) O. columbianum. a, Cephalic vesicle; b, cervical papillae; c, lateral alae; d, cervical groove; e, oesophagus; f, intestine.

Figure 2

Fig. 2Representative ITS rDNA PCR products of O. asperum and O. columbianum isolates. Lanes: 1–6, O. asperum samples from mainland China (samples OASYM1, OASYF1, OASZM1, OASZF1, OASSM1, OASSF1, respectively); 7–12, O. columbianum samples from mainland China (samples OCHDM1, OCHDF1, OCHDM2, OCHDF2, OCHDM3, OCHDF3, respectively); C, no-DNA control; M, DNA size marker 2000 (ordinate values in bp). Refer to table 1 for sample information.

Figure 3

Table 2Pairwise comparison of sequence differences (in %) in the first (ITS-1, above the diagonal) and second internal transcribed spacers (ITS-2, below the diagonal) of nuclear ribosomal DNA within and among O. columbianum and O. asperum.

Figure 4

Fig. 3Specificity of the specific PCR assay for the detection of O. columbianum. Lanes: 1–2, O. columbianum (samples OCHDM7 and OCHDF9); 3–4, O. asperum (samples OASYM1 and OASZF1); 5–6, Haemonchus contortus (samples HCM and HCF); 7–8, Nematodirus sp. (samples NM and NF); 9, Gongylonema pulchrum (sample GPM); 10–11, Trichuris spp. (samples TM and TF); C, no-DNA control; M, DNA size marker 2000 (ordinate values in bp). Refer to table 1 for sample information.

Figure 5

Fig. 4Sensitivity of the specific PCR for the identification of O. columbianum by agarose gel electrophoresis. Lanes: 1–9, O. columbianum DNA (sample OCHDF9) at concentrations of 53.9, 13.5, 3.4, 0.8, 0.2, 0.05, 0.013, 0.003 and 0.0008 ng/μl, respectively; C, no-DNA control; M, DNA size marker 2000 (ordinate values in bp).

Figure 6

Fig. 5The application of the specific PCR to discriminate O. asperum and O. columbianum isolates from different geographic regions in China. Lanes: 1–6, O. columbianum from mainland China (samples OCHDM4, OCHDF6, OCHDM5, OCHDF7, OCHDM6, OCHDF8, respectively); 7–12, O. asperum from mainland China (samples OASYM5, OASYF3, OASZM3, OASZF2, OASSM5, OASSF3, respectively); C, no-DNA control; M, DNA size marker 2000 (ordinate values in bp). Refer to table 1 for sample information.

Figure 7

Fig. 6Maximum parsimony (MP) trees of Oesophagostomum spp. based on ITS-1 (A) and ITS-2 rDNA (B) using Angiostrongylus vasorum (GU045372) as the outgroup.