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Defining the Role of the Environment in the Emergence and Persistence of vanA Vancomycin-Resistant Enterococcus (VRE) in an Intensive Care Unit: A Molecular Epidemiological Study

Published online by Cambridge University Press:  03 April 2018

Andie S. Lee*
Affiliation:
Departments of Infectious Diseases and Microbiology, Royal Prince Alfred Hospital, Sydney, New South Wales, AustraliaFaculty of Medicine, University of Sydney, Sydney, New South Wales, Australia
Elizabeth White
Affiliation:
Infection Control Department, Royal Prince Alfred Hospital, Sydney, New South Wales, Australia
Leigh G. Monahan
Affiliation:
The ithree institute, University of Technology Sydney, Sydney, New South Wales, Australia
Slade O. Jensen
Affiliation:
Antibiotic Resistance and Mobile Elements Group, Ingham Institute, Sydney, New South Wales, AustraliaMedical Sciences Research Group, School of Medicine, Western Sydney University, Sydney, New South Wales, Australia
Raymond Chan
Affiliation:
Departments of Infectious Diseases and Microbiology, Royal Prince Alfred Hospital, Sydney, New South Wales, AustraliaFaculty of Medicine, University of Sydney, Sydney, New South Wales, Australia
Sebastiaan J. van Hal
Affiliation:
Departments of Infectious Diseases and Microbiology, Royal Prince Alfred Hospital, Sydney, New South Wales, AustraliaAntibiotic Resistance and Mobile Elements Group, Ingham Institute, Sydney, New South Wales, AustraliaMedical Sciences Research Group, School of Medicine, Western Sydney University, Sydney, New South Wales, Australia
*
Address correspondence to Andie S. Lee, Department of Microbiology, Royal Prince Alfred Hospital, Missenden Road, Camperdown NSW 2050, Sydney, NSW, Australia (andie.lee@health.nsw.gov.au).
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Abstract

OBJECTIVE

To describe the transmission dynamics of the emergence and persistence of vanA vancomycin-resistant enterococcus (VRE) in an intensive care unit (ICU) using whole-genome sequencing of patient and environmental isolates.

DESIGN

Retrospective cohort study.

SETTING

ICU in a tertiary referral center.

PARTICIPANTS

Patients admitted to the ICU over an 11-month period.

METHODS

VanA VRE isolated from patients (n=31) were sequenced using the Illumina MiSeq platform. Environmental samples from bed spaces, equipment, and waste rooms were collected. All vanA VRE-positive environmental samples (n=14) were also sequenced. Data were collected regarding patient ward and bed movements.

RESULTS

The 31 patient vanA VRE isolates were from screening (n=19), urine (n=4), bloodstream (n=3), skin/wound (n=3), and intra-abdominal (n=2) sources. The phylogeny from sequencing data confirmed several VRE clusters, with 1 group accounting for 38 of 45 isolates (84%). Within this cluster, cross-transmission was extensive and complex across the ICU. Directionality indicated that colonized patients contaminated environmental sites. Similarly, environmental sources not only led to patient colonization but also to infection. Notably, shared equipment acted as a conduit for transmission between different ICU areas. Infected patients, however, were not linked to further VRE transmission.

CONCLUSIONS

Genomic sequencing confirmed a predominantly clonal outbreak of VRE with complex transmission dynamics. The environmental reservoir, particularly from shared equipment, played a key role in ongoing VRE spread. This study provides evidence to support the use of multifaceted strategies, with an emphasis on measures to reduce bacterial burden in the environment, for successful VRE control.

Infect Control Hosp Epidemiol 2018;39:668–675

Information

Type
Original Articles
Copyright
© 2018 by The Society for Healthcare Epidemiology of America. All rights reserved 
Figure 0

TABLE 1Characteristics of ICU Patients With vanA VRE

Figure 1

FIGURE 1Isolation of vancomycin-resistant enterococcus (VRE) from environmental samples. Detection of VRE from environmental samples collected from ICU-1, ICU-2 and shared equipment. Results from sampling of bed spaces are labelled with the colonization status of the bed occupant at the time of sampling. NOTE. VRE, vancomycin-resistant enterococcus; MRO, multiresistant organism; ECG, electrocardiogram.

Figure 2

FIGURE 2Maximum-likelihood phylogenetic tree. The phylogeny of all sequenced isolates (n=45) with the isolate identifier and source of isolation depicted by the legend to the left of the tree. Four clusters were observed (see text for details). Members of the largest cluster (cluster 1 outlined by the top grey box) all classified as a single multilocus sequence type. Further analysis was directed at sequences within the predominant cluster that met inclusion criteria (ie, isolates with an identifier). Identifiers are shown to allow for cross-referencing between Figures 2 and 3. NOTE. SNV, single-nucleotide variant.

Figure 3

FIGURE 3Inter- and intra-intensive care unit (ICU) transmission dynamics. Transmission chains and directionality of cluster 1 sequenced isolates within ±2 months of the date of environmental sampling. Arrows between samples indicate the likely ancestor or transmission chain of each isolate with darker arrow colors representing higher likelihoods of the parent isolate being the true ancestor. The time scale is provided on the x-axis with isolate source depicted using colors according to the legend at the top left of the figure. Environmental isolates are further categorized into shared equipment and high-touch areas in the legend. Circular shapes indicate a nonisolation area, and square shapes indicate that the patient was in a single room at the time the first positive VRE sample was collected. All shapes are highlighted with either dark blue or turquoise to reflect adjacent (within 1 bed space either side of the index isolate) and distant (>1 one bed space away) intra-ICU transmission respectively. Grey borders represent inter-ICU transmission events. For example, isolate 9 (a screening isolate on day 56) obtained from a nonisolated patient led to contamination of a high-touch area (G4, in the other ICU on day 60). This high-touch region was subsequently the source for a distant (>1 bed space apart) colonization (patient 24) and an infection event (patient 31) ~26 and 41 days later in the same ICU (intra-ICU events). Both patients were isolated at the time of first VRE detection. NOTE. IV, intravenous; ECG, electrocardiogram; POC, point-of-care.

Figure 4

FIGURE 4Vancomycin-resistant enterococcus (VRE) acquisition and hand hygiene compliance rates. The long arrow indicates the time point at which environmental sampling occurred in the intensive care units (ICUs). The short arrows labelled with “M” indicate the timing of multidisciplinary meetings between ICU, executive, environmental services, infection control and infectious diseases staff. NOTE. VRE, vancomycin-resistant enterococcus; M, multidisciplinary meeting.

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