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Contrasting effects of geographical separation on the genetic population structure of sympatric species of mites in avocado orchards

Published online by Cambridge University Press:  28 May 2014

S. Guzman-Valencia
Affiliation:
Postgrado en Fitosanidad-Entomología y Acarología, Colegio de Postgraduados, Km 36.5 Carretera México-Texcoco, Montecillo, Texcoco, Edo, de México 56230, Mexico
M.T. Santillán-Galicia*
Affiliation:
Postgrado en Fitosanidad-Entomología y Acarología, Colegio de Postgraduados, Km 36.5 Carretera México-Texcoco, Montecillo, Texcoco, Edo, de México 56230, Mexico
A.W. Guzmán-Franco
Affiliation:
Postgrado en Fitosanidad-Entomología y Acarología, Colegio de Postgraduados, Km 36.5 Carretera México-Texcoco, Montecillo, Texcoco, Edo, de México 56230, Mexico
H. González-Hernández
Affiliation:
Postgrado en Fitosanidad-Entomología y Acarología, Colegio de Postgraduados, Km 36.5 Carretera México-Texcoco, Montecillo, Texcoco, Edo, de México 56230, Mexico
M.G. Carrillo-Benítez
Affiliation:
Postgrado en Fitosanidad-Entomología y Acarología, Colegio de Postgraduados, Km 36.5 Carretera México-Texcoco, Montecillo, Texcoco, Edo, de México 56230, Mexico
J. Suárez-Espinoza
Affiliation:
Postgrado en Estadística, Colegio de Postgraduados, Km 36.5 Carretera México-Texcoco, Montecillo, Texcoco, Edo, de México 56230, Mexico
*
*Author for correspondence Phone: + (52) 595 9520200 Fax: + (52) 595 9520200 E-mail: tgalicia@colpos.mx, teresa.santillan.galicia@gmail.com
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Abstract

Oligonychus punicae and Oligonychus perseae (Acari: Tetranychidae) are the most important mite species affecting avocado orchards in Mexico. Here we used nucleotide sequence data from segments of the nuclear ribosomal internal transcribed spacers (ITS1 and ITS2) and mitochondrial cytochrome oxidase subunit I (COI) genes to assess the phylogenetic relationships between both sympatric mite species and, using only ITS sequence data, examine genetic variation and population structure in both species, to test the hypothesis that, although both species co-occur, their genetic population structures are different in both Michoacan state (main producer) and Mexico state. Phylogenetic analysis showed a clear separation between both species using ITS and COI sequence information. Haplotype network analysis done on 24 samples of O. punicae revealed low genetic diversity with only three haplotypes found but a significant geographical population structure confirmed by analysis of molecular variance (AMOVA) and Kimura-2-parameter (K2P) analyses. In addition, a Mantel test revealed that geographical isolation was a factor responsible for the genetic differentiation. In contrast, analyses of 22 samples of O. perseae revealed high genetic diversity with 15 haplotypes found but no geographical structure confirmed by the AMOVA, K2P and Mantel test analyses. We have suggested that geographical separation is one of the most important factors driving genetic variation, but that it affected each species differently. The role of the ecology of these species on our results, and the importance of our findings in the development of monitoring and control strategies are discussed.

Information

Type
Research Paper
Copyright
Copyright © Cambridge University Press 2014 
Figure 0

Fig. 1. Map showing the six localities sampled in our study in Michoacan (A) and Mexico (B) states, Mexico. For details about localities see Table 1.

Figure 1

Table 1. Collection sites in Michoacan and Mexico states, Mexico.

Figure 2

Table 2. Sampling sites where O. punicae were collected and GenBank accession numbers for DNA extracted from these samples for ITS1, ITS2 and COI sequencing and phylogenetic analysis.

Figure 3

Table 3. Sampling sites where O. perseae were collected and GenBank accession numbers for DNA extracted from these samples for ITS1, ITS2 and COI sequencing and phylogenetic analysis.

Figure 4

Fig. 2. Dendrogram inferred from MP, ML and NJ analyses of the COI sequence data of O. punicae and O. perseae. Samples named in bold and underlined were collected in Mexico state. Four sequences representing four Oligonychus species retrieved from GenBank were used as outgroups (accession numbers are in brackets). Only bootstrap values above 80% are shown.

Figure 5

Fig. 3. Dendogram inferred from MP, ML and NJ analyses of the combined ITS1 and ITS2 data from O. punicae and O. perseae. Samples named in bold and underlined were collected in Mexico state. Haplotype designations are shown for each mite species, for the O. perseae all samples represent an individual haplotype except those marked in red, which were grouped in one haplotype (see Fig. 5). Four sequences representing four Oligonychus species retrieved from GenBank were used as outgroups (accession numbers are in brackets). Only bootstrap values above 80% are shown.

Figure 6

Fig. 4. Most parsimonious haplotype network for (A) O. punicae and (B) O. perseae. Haplotypes are connected with a 95% confidence limit. Each line in the network represents a single mutational change. Small circles indicate missing haplotypes. Numbers of samples per haplotype are shown in parentheses. Colours indicate different populations within each group (Michoacan and Mexico states) where each haplotype was present.

Figure 7

Fig. 5. Mantel test graphs showing correlation between genetic variations (based on ITS sequence data) found in mite populations and distance (km) for (A) O. punicae populations and (B) O. perseae populations.

Figure 8

Table 4. Genetic distances (K2P method) among populations of O. punicae and O. perseae from six different localities in Michoacan and Mexico (presented in bold) states.

Figure 9

Table 5. Results of AMOVA analysis of ITS sequences from O. punicae and O. perseae populations.