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Improvements on the distribution of maximal segmental scores in a Markovian sequence

Published online by Cambridge University Press:  04 May 2020

S. Grusea*
Affiliation:
Institut de Mathématiques de Toulouse
S. Mercier*
Affiliation:
Institut de Mathématiques de Toulouse
*
*Postal address: Institut National des Sciences Appliquées, 135 avenue de Rangueil, 31400, Toulouse, France.
***Postal address: Institut de Mathématiques de Toulouse, UMR5219, Université de Toulouse 2 Jean Jaurès, 5 allées Antonio Machado, 31058, Toulouse, Cedex 09, France.
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Abstract

Let $(A_i)_{i \geq 0}$ be a finite-state irreducible aperiodic Markov chain and f a lattice score function such that the average score is negative and positive scores are possible. Define $S_0\coloneqq 0$ and $S_k\coloneqq \sum_{i=1}^k f(A_i)$ the successive partial sums, $S^+$ the maximal non-negative partial sum, $Q_1$ the maximal segmental score of the first excursion above 0, and $M_n\coloneqq \max_{0\leq k\leq\ell\leq n} (S_{\ell}-S_k)$ the local score, first defined by Karlin and Altschul (1990). We establish recursive formulae for the exact distribution of $S^+$ and derive a new approximation for the tail behaviour of $Q_1$ , together with an asymptotic equivalence for the distribution of $M_n$ . Computational methods are explicitly presented in a simple application case. The new approximations are compared with those proposed by Karlin and Dembo (1992) in order to evaluate improvements, both in the simple application case and on the real data examples considered by Karlin and Altschul (1990).

Information

Type
Research Papers
Copyright
© Applied Probability Trust 2020
Figure 0

Figure 1: Cumulative distribution function of $S^+$ for the simple scoring scheme $({-}1,0,+1)$ and $A_0=A$ . Left panel: Comparison between the approximation of [9], a Monte Carlo estimation with sequences of length $n=300$ , and the exact formula proposed in Theorem 2.1. Right panel: Comparison, for different values of n, of the Monte Carlo empirical cumulative distribution function and the exact one given in Theorem 2.1.

Figure 1

Figure 2: Comparison of the different approximations for $p(n,x)=\textrm{P}\big(M_n\leq \frac{\log(n)}{\theta^*}+x\big)$ as a function of n, for fixed x and for the simple scoring scheme $({-}1,0,+1)$ : the asymptotic lower and upper bounds of [9] (see (6) and (7)), the approximation proposed in Theorem 2.4, and a Monte Carlo estimation. Left panel: p(n, x) for $x=-5$ . Right panel: p(n, x) for $x=-8$ .

Figure 2

Figure 3: Comparison of the different approximations for $p(n,x)=\textrm{P}\big(M_n\leq \frac{\log(n)}{\theta^*}+x\big)$ as a function of x, for fixed $n=100$ , and for the simple scoring scheme $({-}1,0,+1)$ : the asymptotic lower and upper bounds of [9] (see (6) and (7)), the approximation proposed in Theorem 2.4, and a Monte Carlo estimation.

Figure 3

Table 1. Numerical comparison between our approximation for the local score distribution and the one from [9], using relative errors (see (32)) and two classical dissimilarity measures recalled in (33) and (34).