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Molecular characterization of oil palm Elaeis guineensis Jacq. materials from Cameroon

Published online by Cambridge University Press:  04 January 2013

Diana Arias
Affiliation:
Oil Palm Biology and Breeding Research Program, Colombian Oil Palm Research Center – Cenipalma, Street 21, No. 42-55, Bogota, Colombia
Carmenza Montoya
Affiliation:
Oil Palm Biology and Breeding Research Program, Colombian Oil Palm Research Center – Cenipalma, Street 21, No. 42-55, Bogota, Colombia
Hernán Romero*
Affiliation:
Oil Palm Biology and Breeding Research Program, Colombian Oil Palm Research Center – Cenipalma, Street 21, No. 42-55, Bogota, Colombia Department of Biology, Universidad Nacional de Colombia, Cundinamarca 111321, Colombia
*
*Corresponding author. E-mail: hromero@ceniplama.org
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Abstract

The narrow genetic base of existing commercial oil palm cultivars has prompted oil palm breeders to give increased importance to augmenting these genetic resources because the sustainable development of the crop depends largely on the availability of genetic diversity and its use. Therefore, the purpose of this study was to conduct a molecular characterization of an ex situ collection of oil palm Elaeis guineensis Jacq. populations from the Republic of Cameroon using microsatellite molecular markers. Overall, 31 simple sequence repeats were polymorphic, with a total of 223 alleles, 78.4% of which were found at low frequency. The total genetic diversity was relatively high (HT= 0.673). The genetic differentiation between geographical regions was low (GST= 0.023, P= 0.001), and between families it was high (GST= 0.166, P= 0.001), showing greater variation between families than among geographical regions. The molecular data indicate that genetic diversity among the genotypes evaluated is mainly distributed within regions, suggesting that there is no isolation by geographical distance and that all the sampled individuals form a single diverse population. Therefore, it was concluded that a relatively low number of accessions (120 in the analysed case) that includes at least one representative of each family would allow us to efficiently collect almost the entire genetic diversity of Cameroon within the collection studied. This will allow for the efficient use of genetic resources and a reduction in morpho-agronomic characterization costs.

Information

Type
Research Article
Copyright
Copyright © NIAB 2013 
Figure 0

Fig. 1 Map of the Republic of Cameroon showing locations of the six geographical regions where the oil palm seeds were collected. (a) Abong-Mbang, (b) Edea, (c) Obala, (d) Ebolowa, (e) Bafang and (f) Mankim.

Figure 1

Table 1 Allele classification according to allelic frequencies based on the approach of Buchert et al. (1997) (high, intermediate, low and rare) and Marshall and Brown (1975) (common and rare)

Figure 2

Table 2 Genetic diversity parameters for each studied geographical regions

Figure 3

Table 3 Nei's coefficients of genetic diversity and differentiation and F statistical coefficients

Figure 4

Fig. 2 (colour online) Unrooted neighbour-joining tree realized from the dissimilarity matrix. The tree shows 311 E. guineensis oil palms from Cameroon that are not separated according to their collection site, but instead can be seen as a set of heterogeneous individuals. Genotypes are identified by different lines coloured according to the geographical area of origin (Abong-Mbang: green; Edea: blue; Obala: pink; Ebolowa: brown; Bafang: yellow; Mankin: red).

Figure 5

Fig. 3 MCA of the 311 genotypes of oil palm E. guineensis in the first three dimensions. It shows the conformation of the five groups, each identified by a symbol.

Supplementary material: File

Arias Supplementary Material

Appendix

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