Carbapenemase-producing organisms (CPOs) are a critically important antimicrobial resistance threat.Reference Nordmann, Naas and Poirel1 Most CPO transmission in hospitals is person to person; however, outbreaks linked to hospital wastewater drainage systems have been reported.Reference Kizny Gordon, Mathers and Cheong2–Reference Parkes and Hota4 In Ontario, Canada, at least 6 hospitals have reported transmission from sink and/or shower drains to patients.Reference Jamal, Garcia-Jeldes and Baqi5
Optimal management of CPO-contaminated drains is unknown. During outbreaks, both success and failure of attempts to decontaminate sink drains have been reported.Reference Kizny Gordon, Mathers and Cheong2–Reference Parkes and Hota4 Our randomized controlled trial aimed to determine whether combining chemical, mechanical, and heat cleaning was superior to standard cleaning for the decontamination of persistently CPO-contaminated drains.
Methods
Study population and trial design
This trial was conducted at William Osler Health System (WOHS), an 870-bed tertiary-care hospital in Ontario, Canada. In a prior study,Reference Jamal, Mataseje and Brown6 49 CPO-contaminated drains were identified at WOHS between October 2017 and January 2018: 34 harbored Enterobacterales, 11 harbored Pseudomonas spp, 3 harbored Acinetobacter spp, and 1 harbored Shewanella spp. These 49 drains were cultured again twice in August 2018. The 32 drains that remained CPO contaminated on both culture days in 2018 were deemed to still be contaminated and were thus eligible for this study. These drains were stratified by drain type (sink vs shower) and randomized to intervention or comparator.
Study intervention, randomization, and blinding
The intervention was combined chemical, mechanical, and heat cleaning of CPO-contaminated drains administered once on day 0 by a contracted plumber. The intervention protocol was developed by the infection prevention and control department at St Joseph’s Health Centre, Toronto, Ontario, in 2016. First, the shower or sink grate was removed and was scrubbed and rinsed. Second, the P-trap was filled with sodium hydroxide (White Magic, Chemfax, Calgary, Canada) and plugged to allow 10 minutes of contact time; the drain was then brushed and rinsed with water for 10 minutes. Third, the P-trap was filled with enzymatic solution (EmPower, Metrex Research, Orange, CA) and plugged to allow 10 minutes of contact time; the drain was then brushed and rinsed with water for 10 minutes. Fourth, the P-trap was filled with accelerated hydrogen peroxide (Rescue Gel Sporicidal, Diversey, Charlotte, NC) and plugged to allow 10 minutes of contact time; the drain was then brushed and rinsed with water for 10 minutes. Finally, a steamer tip was inserted into the drain for 10 minutes.
The comparator was the existing protocol for CPO-contaminated drains at WOHS administered by trained hospital housekeeping staff once on day 0 on regular wards and weekly for sinks in the intensive care unit (ICU). Accelerated hydrogen-peroxide sporicidal gel (300 mL, Rescue Gel Sporicidal, Diversey, Charlotte, NC) was poured into the drain and onto the sink basin surrounding the drain, allowed 1 minute of contact time, then rinsed with running water for 2 minutes.
Eligible drains were randomized with a 1:1 allocation ratio using proc RANUNI in SAS software (SAS Institute, Cary, NC). Randomization was performed by a research assistant not otherwise involved in the study, who communicated drain assignments to the contracted plumber or housekeeping staff administering the intervention or comparator. Study investigators, WOHS infection prevention and control department members, and personnel obtaining and processing drain specimens were blinded to drain allocation.
Collection and laboratory processing of drain specimens
One specimen was collected from each drain on day 0 (before administration of the intervention or comparator), day 1, day 2, day 3, day 7, day 14, month 1, month 2, month 3, month 4, month 5, and month 6. A 15-cm sterile cotton swab was inserted as far into the drain tailpiece as possible and all surfaces of the tailpiece were swabbed vigorously. Swabs were placed into brain heart infusion with 10% Dey-Engley neutralizing broth (Hardy Diagnostics, Santa Maria, USA) and were incubated at 37°C for 18–24 hours. Two hundred microlitres of incubated broth was centrifuged at 5,000 rpm for 5 minutes, then the pellet was resuspended in 100 µL lysis buffer (1% Triton X-100, 0.5% Tween 20, 1 mM EDTA, 100 mM Tris-HCl, pH 8) and boiled at 100°C for 10 minutes. The cell debris was removed by centrifugation and the supernatant was preserved. The PCR reaction mix (2× Qiagen Quantitect Probe PCR Master Mix, 10 μM forward and reverse primers, 2.5 μM Taqman Pro probes) was thawed, then the PCR was set up in a 96-well plate with 3 reactions per sample for 3 different sets of multiplex reactions targeting different carbapenemase genes. PCR was run on an ABI 7500 Real-time Sequence Detection System (Applied Biosystems, ThermoFisher Scientific, Waltham, MA).Reference Tijet, Patel and Melano7
Broth from direct PCR-positive specimens from day 0, day 14, month 2, month 4, and month 6 were subcultured onto a Supercarba plate (CHROMagar, Paris, France). Each morphologically distinct colony was identified to the species level using matrix-assisted laser desorption/ionization time-of-flight mass spectroscopy (MALDI-TOF MS, bioMérieux, Marcy-l’Étoile, France), then was subcultured onto blood agar (Oxoid, Nepean, Canada). The mCIM test8 was performed on Enterobacterales isolates. PCR for carbapenemase gene detection was performed as described above for each mCIM-positive Enterobacterales isolate and all afermenters.
Inpatients with CPO colonization or infection at WOHS
Room locations were documented for all inpatients with CPO colonization or infection at WOHS during the trial. The hospital operates at >100% capacity, and patient room assignments were not influenced by the trial.
Study outcomes
The primary outcome was drain decontamination, defined as no detectable carbapenemase gene in the drain from day 1 to day 7 (inclusive).
Sample size
We estimated that 50% of drains in the comparator group would remain contaminated at day 7. With a power of 80% and a 2-sided α of 0.05, we would be able to conclude that the intervention was superior to the comparator if 10% or fewer drains in the intervention group remained contaminated.
Statistical methods
The proportion of drains that were decontaminated in intervention versus comparator groups were compared using the Fisher exact test. The relative risks (and 95% confidence intervals, CIs) of decontamination in the 2 groups were calculated. To determine whether direct PCR cycle threshold (Ct) value was associated with successful culture of a CPO, we used a logistic regression model with a generalized estimating equation with an exchangeable correlation matrix to account for cultures from the same drain over time. Analyses were conducted using SAS version 9.4M6 software (SAS Institute, Cary, NC).
Results
Study population
Overall, 32 drains identified as persistently CPO contaminated were randomized to intervention or comparator (Fig. 1). All randomized drains were treated as assigned and specimens were obtained for PCR or culture beyond day 7. Baseline characteristics of drains are in Table 1. There were no CPO outbreaks at WOHS during this study. No patients identified as CPO-colonized/infected occupied rooms with randomized drains during the study period.
Study flow diagram. All drains completed the trial as assigned, except 1 shower drain (intervention group) missing month 5 and 6 swabs due to a room renovation.

Baseline Characteristics of Drains (N=32)

Note. NDM, New Delhi metallo-beta-lactamase; OXA, Oxacillinase; KPC, Klebsiella pneumoniae carbapenemase; VIM, Verona integron-encoded metallo-beta-lactamase; IMP, imipenemase.
a As per hospital policy, this single ICU drain received comparator cleaning weekly during the study, while other drains in the standard cleaning group were cleaned only once on day 0.
b There was no association between number of carbapenamase genes and decontamination success (success in intervention in 4 of 8 with 1 gene, 2/2 with 2 genes, and 4/4 with 3/4 genes: success in control in one drain with 1 gene).
Decontamination until day 7 (inclusive)
Overall, 10 of 16 (63%) drains in the intervention group were decontaminated, compared to 1 of 16 (6%) in the comparator group (relative risk, 10.0; 95% CI, 1.4–69; P = .002). Decontamination was successful among 2 of 3 intervention sink drains and 0 of 3 comparator sink drains, and among 8 of 13 intervention shower drains and 1 of 13 comparator shower drains.
Duration of decontamination
Of the 10 drains in the intervention group in which the carbapenemase gene present at enrollment was not detected from day 1 to day 7, the gene was detected again in all drains (100%). The carbapenemase gene became detectable again at day 14 (n = 1, 10%), month 1 (n = 3, 30%), month 3 (n = 4, 40%), month 4 (n = 1, 10%), and month 6 (n = 1, 10%). In the single drain in the comparator group in which the gene present at enrolment was not detected from day 1 to day 7, it was detected again at month 3.
Duration of contamination among drains that remained contaminated
At least 1 carbapenemase gene(s) remained detectable at month 6 in all 15 drains in the comparator group that were not decontaminated. This includes the single ICU drain cleaned weekly. Of the 6 drains in the intervention group that were not decontaminated, the carbapenemase gene(s) present at enrollment was last detected on day 2 in 1 drain, month 4 in 1 drain, month 5 in 2 drains, and month 6 in 2 drains. Among specimens obtained between day 14 and month 6, 58 of 110 (53%) from intervention drains (22 of 40 from decontamination failures, and 36 of 70 from decontamination successes) yielded carbapenemase genes, compared to 109 of 112 (97%) from comparator drains (P < .0001).
Appearance of new genes
Overall, 23 (72%) had a carbapenemase gene appear in follow-up that was not detectable at enrollment; 13 were in the comparator group and 10 were in the intervention group. The median number of newly appearing genes in each drain was 1 (range, 0–3).
Culture of PCR-positive drains
Overall, 30 drains (94%) were PCR-positive on day 0, day 14, month 2, month 4, or month 6. Among these 30 drains and across these time points, 219 carbapenemase genes were detected; an organism could be cultured for 60 genes (27%) from 24 drains (80%). Organisms producing carbapenemases that were cultured are shown in Supplementary Figure 1 (online).
A lower Ct was associated with a positive culture (odds ratio, 2.4 for every 10 increase in Ct, 95% CI, 1.4-4.3; median Ct, 23 (interquartile range [IQR], 18–29) if an organism was cultured versus 28 (IQR, 23–32) if not cultured, P = .0006).
Discussion
In this randomized controlled trial, we compared intensive cleaning (intervention) to standard cleaning (comparator) for the decontamination of hospital drains persistently harboring CPOs in a nonoutbreak setting. Compared to comparator drains, intervention drains had a higher rate of study-defined decontamination. Successful decontamination was relatively short-lived, but intervention drains that failed decontamination were less likely than comparator drains to have carbapenemase genes detected in follow-up from day 14 to month 6. Almost three-quarters of drains had carbapenemase genes that were not detectable at enrollment appear in follow-up.
Interventions to decontaminate sink and shower drains have mainly been reported in the context of outbreaks.Reference Kizny Gordon, Mathers and Cheong2-Reference Parkes and Hota4 These interventions include disinfection with bleach, acetic acid, glucoprotamin, phenols, hydrogen peroxide vapor, or pressurized steam as well as replacement of sink drains.Reference Kizny Gordon, Mathers and Cheong2-Reference Parkes and Hota4 These interventions are often bundled with other control strategies and have been reported to contribute to interrupting outbreaks. However, none have reliably eradicated drain contamination.
All drains (but one) in the comparator group remained contaminated for the entire duration of the study. Among drains in the intervention group that were decontaminated, the carbapenemase genes became detectable again within weeks to months. These findings highlight the challenges of eradicating biofilm from drains and the importance of preventing drain contamination.
Factors contributing to drain contamination include the misuse of sinks and drains for disposal of patient waste, bodily fluids, and nutrients; in one study, hand hygiene sinks were used for hand hygiene only 4% of the time.Reference Parkes and Hota4,Reference Grabowski, Lobo and Gunnell9 Because hand hygiene can be almost always be effectively performed with alcohol hand rub, the removal of hand hygiene sinks near patients and implementation of “water-free” care may be considered.Reference Parkes and Hota4 Sink design may also influence biofilm formation or dispersion. Plastic traps, aerators, and overflows may promote biofilm and should be avoided.Reference Parkes and Hota4 A short basin depth and flow of water from the faucet directly into the drain may promote biofilm dispersion.Reference Kotay, Chai, Guilford, Barry, Barry and Mathers10 Sink-trap heating and vibration devices may reduce likelihood of drain colonization by CPOs.Reference Parkes and Hota4
There are at least 3 explanations for the appearance of new carbapenemase genes in follow-up. Despite the best efforts to swab all sides of the tail piece, it is possible that these carbapenemases were present at earlier specimen collection dates in parts of the biofilm not adequately swabbed. Patients with undetected CPO colonization may have occupied these rooms and contaminated the drains during the study. Drain-to-drain transmission is also possible.Reference Kotay, Chai, Guilford, Barry, Barry and Mathers10
This study has several limitations. Generalizability to other settings may be limited due to variability in structures and/or materials of different drains and duration of drain contamination prior to cleaning. Our drains were contaminated for several months or years prior to randomization; whether the intervention would have had a sustained effect if administered immediately after drain contamination is unknown. This study was not designed or powered to examine the impact of drain decontamination on CPO acquisition rates among patients; it is possible that incomplete sink decontamination might reduce transmission to patients. Finally, the intervention was administered once; repeated administration might have been more successful.
In conclusion, an intensive protocol combining chemical, mechanical, and heat cleaning was more successful than standard cleaning in the short-term decontamination of CPO-contaminated hospital drains. The intervention may be useful if administered repeatedly during a wastewater drainage system-associated CPO outbreak. Methods to prevent CPE drain contamination should continue to be investigated.
Supplementary material
To view supplementary material for this article, please visit https://doi.org/10.1017/ice.2020.1384.
Acknowledgments
We thank the contracted plumber and housekeeping staff at WOHS for their assistance with this trial.
Financial support
This study was funded by an Infection Prevention Strategy Sudden Science Research Grant (no. 2018-01-35). Alainna J. Jamal is supported by the Vanier Canada Graduate Scholarship.
Conflicts of interest
All authors report no conflicts of interest related to this article.

