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Automating case extraction and screening for hospital-associated Staphylococcus aureus bacteremia surveillance in two Canadian hospitals

Published online by Cambridge University Press:  16 October 2026

Michael Payne*
Affiliation:
University of British Columbia, Canada Providence Health Care, Canada
Minh T. Nguyen
Affiliation:
University of British Columbia, Canada Prince George Regional Hospital: University Hospital of Northern British Columbia, Canada
Shay-Anne Daniels
Affiliation:
Vancouver Island Health Authority, Canada
Azra Sharma
Affiliation:
Providence Health Care, Canada
Shayan Shakeraneh
Affiliation:
Providence Health Care, Canada
Sultan Alawfi
Affiliation:
Security Forces Hospital in Riyadh: Security Forces Hospital Program, Saudi Arabia
Sulaiman Tabesh
Affiliation:
Providence Health Care, Canada
Jany Chan
Affiliation:
Providence Health Care, Canada
Jin Huang
Affiliation:
Providence Health Care, Canada
Elizabeth Martin
Affiliation:
Providence Health Care, Canada
Steven Chan
Affiliation:
Providence Health Care, Canada
Christopher F. Lowe
Affiliation:
University of British Columbia, Canada Providence Health Care, Canada
Victor Leung
Affiliation:
University of British Columbia, Canada Providence Health Care, Canada
*
Corresponding author: Michael Payne; Email: mpayne6@mail.ubc.ca
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Abstract

Objective:

Outline our process in creating an efficient surveillance system through increased automation of detecting hospital-associated Staphylococcus aureus bacteremia (HA-SAB). To describe the rate and attributable source of HA-SAB over time at our institutions.

Methods:

We developed an algorithm for extracting cases that met the temporal case definition of hospital-onset Staphylococcus aureus bacteremia (HO-SAB) through our electronic medical record system. The expanded temporal definition included both instances of S. aureus bacteremia (SAB) if occurring>48 hours after admission (HO-SAB Current Admission) or if admitted ≤48 hours but had a previous admission within the past 4 weeks (HO-SAB Previous Admission). Following extraction, clinical review was performed to ascertain if the algorithm extracted HO-SAB cases were hospital-associated SAB (HA-SAB) versus community-associated SAB (CA-SAB) and source(s) of infection.

Results:

Over a 5-year period from 2020 to 2025, the rate of HA-SAB was 15.2–26.2 per 10,000 patient admissions and 1.5–2.7 per 10,000 patient days. Our automated process screened 5,146 total cases of SAB, and determined that 222 cases (4%) fit the temporal definition of HO-SAB. Of these 222 HO-SAB, we classified 189 (85%) cases as HA-SAB and 33 (15%) as CA-SAB. The most common sources of HA-SAB were central lines (23%) and peripheral IVs (22%).

Conclusion:

An automated process is effective at screening cases of SAB. This can improve workflows to enable a sustainable HA-SAB surveillance program as a quality metric for institutions. Our expanded definition of HO-SAB allowed detection and evaluation of an additional 38 (20%) previous admission cases.

Information

Type
Original Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2026. Published by Cambridge University Press on behalf of The Society for Healthcare Epidemiology of America
Figure 0

Figure 1. Figure 1 long description.Clinical algorithm for identification of hospital-associated Staphylococcus aureus bacteremia (HA-SAB) at Providence Health Care (PHC), 2020–2025. Note: MSSA, methicillin sensitive Staphylococcus aureus; MRSA, methicillin resistant Staphylococcus aureus; ED, emergency department; ICP, infection control practitioner; IPAC, infection prevention and control.

Figure 1

Figure 2. Annual hospital-onset Staphylococcus aureus bacteremia (HO-SAB), current versus previous admission. Note: HO-SAB-CA, hospital-onset Staphylococcus aureus bacteremia current admission; HO-SAB-PA, hospital-onset Staphylococcus aureus bacteremia previous admission.

Figure 2

Figure 3. Annual hospital-onset Staphylococcus aureus bacteremia (HO-SAB), hospital versus community-associated. Note: HA-SAB, hospital-associated Staphylococcus aureus bacteremia; CA-SAB, community-associated Staphylococcus aureus bacteremia.

Figure 3

Figure 4. Annual hospital-associated Staphylococcus aureus bacteremia (HA-SAB), MSSA versus MRSA. Note: MSSA, methicillin sensitive Staphylococcus aureus; MRSA, methicillin resistant Staphylococcus aureus.

Figure 4

Figure 5. Annual hospital-associated Staphylococcus aureus bacteremia (HA-SAB) incidence rate. Note: MSSA, methicillin sensitive Staphylococcus aureus; MRSA, methicillin resistant Staphylococcus aureus.

Figure 5

Figure 6. Figure 6 long description.Cumulative sources of hospital-associated Staphylococcus aureus bacteremia (HA-SAB), 2020–2025. Note: Over the 5-year period, there were 189 HA-SAB cases and 214 sources of bacteremia as some patients had multiple sources of bacteremia.

Figure 6

Table 1. Annual hospital-associated Staphylococcus aureus bacteremia (HA-SAB) readmission and mortality outcomes, 2020–2025Table 1 long description.