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A new approach to ancient microorganisms: taxonomy, paleoecology, and biostratigraphy of the Lower Cambrian Berkuta and Chulaktau microbiotas of South Kazakhstan

Published online by Cambridge University Press:  28 March 2016

J. William Schopf
Affiliation:
Department of Earth, Planetary, and Space Sciences, Center for the Study of Evolution and the Origin of Life, and Molecular Biology Institute, University of California, Los Angeles 90095 USA; PennState Astrobiology Research Center, Deike Building, University Park, PA 16802 USA; and University of Wisconsin Astrobiology Research Consortium, Madison, WI 53706, USA; 〈schopf@ess.ucla.edu〉
Vladimir N. Sergeev
Affiliation:
Geological Institute, Russian Academy of Sciences, Pyzhevskii per., 7, Moscow, 119017, Russia, 〈sergeev-micro@rambler.ru〉
Anatoliy B. Kudryavtsev
Affiliation:
Center for the Study of Evolution and the Origin of Life, University of California, Los Angeles 90095 USA; PennState Astrobiology Research Center, Deike Building, University Park, PA 16802 USA; and University of Wisconsin Astrobiology Research Consortium, Madison, WI 53706, USA; 〈kudryavtsev@ess.ucla.edu〉
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Abstract

Peritidal cherts and silicified phosphorites of the Early Cambrian Kyrshabakta (Berkuta Member) and Chulaktau formations of South Kazakhstan contain diverse assemblages of cellularly permineralized microorganisms that like other microbiotas of similar age and setting are dominated by cyanobacteria, both filamentous (oscillatoriacean trichomes and empty sheaths) and coccoidal (chroococcaceans). Although these near-shore assemblages contain sphaeromorph acritarchs, they differ from Neoproterozoic and Early Cambrian microbiotas of more open-marine environments by lacking morphologically complex planktonic eukaryotes such as the acanthomorphic acritarchs that are abundant in the Chulaktau-overlying Shabakta Formation. In general composition, the Berkuta and Chulaktau assemblages are similar both to microfossil assemblages of the pre-trilobite Rovno and Lontova Regional Stages of the East European Platform and to Early Cambrian microbiotas known from chert-phosphorite deposits worldwide.

The studies reported here are based on use of optical microscopy combined with techniques recently introduced to paleobiology: confocal laser scanning microscopy, and Raman and fluorescence spectroscopy and imagery. Taken together, these provide information in situ, in three dimensions and at high spatial resolution, about the organismal morphology; cellular anatomy; chemical composition; and mode, fidelity, and environment of preservation of the permineralized microfossils. Data are presented suggesting that the substitution of samarium for calcium in fossil-preserving apatite may provide evidence of its oxic or anoxic paleoenvironment of formation.

We interpret the Berkuta and Chulaktau assemblages to be composed of 27 taxa assigned to 17 genera of microscopic prokaryotes and eukaryotes that include one new genus and species, Berkutaphycus elongatus.

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Copyright © 2016, The Paleontological Society 
Figure 0

Figure 1(1) Map of the Maly Karatau Range showing the locations of the fossiliferous Kyrshabakta (Berkuta Member) and Chulaktau Formation cherts collected from outcrop at stratigraphic sections K-27, K-28, K-29, K-30, K-32, K-33 and K-40 shown in Fig. 2; the inset map at the upper right indicates the location of the region studied in South Kazakhstan (southwest of Astana, the filled region denoted by the arrow between the Aral Sea and Lake Balqash). (2) Generalized stratigraphic column (at right) and lithologies (at lower left) of the Neoproterozoic (Cryogenian through Ediacaran) and Cambrian deposits of the Maly Karatau Range. Abbreviations for formations: Ak=Aktogai, Ch=Chichkan, Kr=Kurgan, Ks=Kyrshabakta; Bk=Berkuta (known also as the “Lower Dolomite” and here regarded as the Berkuta Member of the Kyrshabakta Formation); Cl=Chulaktau, Sh=Shabakta. Abbreviations for Stages: ND=Nemakit-Daldynian, Tm=Tommotian, At=Atdabanian, Bt=Botomian; and, for East European Platform Regional (EEPR) Stages: Rv=Rovno, Lv=Lontova, Vr=Vergale, Rs=Rausve; E=Ediacaran system. Biostratigraphic zones of Lower Cambrian small shelly fossils and trilobites are shown at the upper right.

Figure 1

Figure 2Stratigraphic correlation of sampled microfossiliferous cherts of the Berkuta Member of the Kyrshabakta Formation and the Chulaktau Formation at stratigraphic sections K-27, K-28, K-29, K-30, K-32, K-33, and K-40 (the geographic locations of which are specified in the text) in the part of the Maly Karatau Range shown in Fig. 1. Sample numbers with adjacent filled circles indicate the stratigraphic levels of the fossiliferous cherts studied here; symbols denoting rock types are shown in Fig. 1; Us=the Ushbass Member of the Chulaktau Formation; Bc=the B. cristata biostratigraphic zone.

Figure 2

Figure 3Quartz- and apatite-permineralized organic-walled microfossils from the Chulaktau Formation shown in optical photomicrographs (1, 6, 11, 16, 21); confocal laser scanning micrographs (2, 7, 12, 17); two-dimensional Raman images documenting the spatial distribution of kerogen (3, 8, 13, 18, 22; blue, acquired at its ~1605 cm−1 major Raman band); and apatite (4, 9, 14, 19, 23; red, acquired at its ~965 cm−1 major Raman band); and two-dimensional spectroscopic fluorescence images showing the spatial distribution of fossil-permineralizing apatite (5, 10, 15, 20; orange, acquired in the spectral range centered at ~603 nm that includes its major fluorescence bands)—fluorescent because of the presence of Sm+3 replacing both Ca I and Ca II sites—and of later-emplaced fossil-encrusting apatite in which Sm+3-replaced Ca I sites (24; orange, acquired at ~597 nm) and Ca II sites (24; green, acquired at ~605 nm) are spatially distinct. The red rectangle in (1) denotes the part of the specimen shown in (3–5); that in (6), in (8–10); that in (11), in (13–15); and that (21), in (22–24); (16) shows the same area as that in (17–20); the arrows in (16) and (17) indicate sites of apatite nucleation. (1-5) Obruchevella parva Reitlinger, 1959, 4681-391 (102) specimen location point (p.) 11, England Finder Slide (EFS) G32[1], GINPC 202. (6–10) O. cf. meishucunensis Song, 1984, 4681-391 (102), p. 17, EFS K41[4], GINPC 197. (11–20) Tetraphycus acutus Sergeev, 1989: (11-15) 4681-391 (102), p. 29, EFS R29[0], GINPC 210; (16–20) 4681-399 (103), p. 26b, EFS P31[0], GINPC 1269. (21–24) Siphonophycus solidum Golub, 1979, 4681-1026 (273), p. 81, EFS W23[1], GINPC 1270.

Figure 3

Figure 4Optical photomicrographs (1, 5, 9, 12, 15, 18), confocal laser scanning micrographs (2, 3, 6, 7, 10, 13, 16, 19), and two-dimensional Raman images showing the spatial distribution of kerogen (4, 8, 11, 14, 17, 20; blue, acquired at its ~1605 cm−1 major band) of quartz-permineralized organic-walled microfossils from the Berkuta Member of the Kyrshabakta Formation. The red rectangle in (1) denotes the part of the specimen shown in (4); that in (5), in (8); that in (9), in (11); that in (12), in (14); that in (15), in (17); and that in (18), in (20). Berkutaphycus elongatus new genus and new species, (1–4) 4681-372 (115a), location point (p.) 22, England Finder Slide (EFS) N35[2], GINPC 1276; (5–8) 4681-372 (115a), p. 31, EFS P39[1], GINPC 1277; (9-11) 4681-372 (115a), p. 26, EFS R41[0], GINPC 1278; (12–14) 4681-373 (115a), p. 7, EFS K44[3], GINPC 1279; (15–17) 4681-373 (115a), p. 10, EFS M38[0], GINPC 1280; (18-20) 4681-382 (115a), p. 13, EFS T46[3], GINPC 1281.

Figure 4

Figure 5Raman (1) and fluorescence spectra (2, 3) of quartz- and apatite-permineralized organic-walled Early Cambrian Maly Karatau Range microfossils. (1) Raman spectra of kerogen comprising permineralized fossils of the Kyrshabakta (Berkuta Member) and Chulaktau formations, in both units having an RIP value of ~7.5 (see text). The relatively prominent D band shoulder of the Chulaktau kerogen, derived largely from hydrogen situated on the periphery of the platy polycyclic aromatic hydrocarbons (PAHS) of which it is dominantly composed, indicates that that it has a somewhat higher H:C composition than the Berkuta kerogen (Schopf et al., 2005). (2) Fluorescence spectra acquired from differing areas of the Siphonophycus solidum-encrusting apatite crystal denoted by the green arrow in Fig. 3.24 in which Sm+3 replaced Ca II and Ca I sites are spatially distinct. (3) Complete fluorescence spectrum of this apatite-encrusted Chulaktau specimen of S. solidum.

Figure 5

Figure 6Synoptic listing of the microfossil taxa reported here from the Berkuta Member of the Kyrshabakta Formation and the Chulaktau Formation, indicating their inferred affinities, relative abundance in the microbiotas, and their size ranges displayed on a logarithmic scale.

Figure 6

Figure 7Optical photomicrographs (1, 3, 5) and confocal laser scanning micrographs (2, 4, 6, 7) of Chulaktau Formation quartz- and apatite-permineralized organic-walled specimens of Obruchevella parva Reitlinger, 1959: (1, 2) 4681-369 (102), specimen location point (p.) 19, England Finder Slide (EFS) Q40[3], GINPC 1250; (3, 4) 4681-365 (102), p. 2, EFS H35[3], GINPC 200; (5, 6) 4681-369 (102), p. 10, EFS N30[0], GINPC 1251; (7) 4681-369 (102), p. 13, EFS 044[2], GINPC 1252. Like many of the Chulaktau fossils, the kerogenous walls of these specimens were permineralized in quartz with their interior voids being infilled by apatite; if such apatite contains samarium and/or europium substituted for calcium (see text and Fig. 5), their presence can be evidenced in CLSM images by the occurrence of relatively bright, light gray to white fluorescent regions such as those evident in transverse sections of the spiral tubes in (7).

Figure 7

Figure 8Optical photomicrographs (1, 3, 5, 7) and confocal laser scanning micrographs (2, 4, 6, 8) of Chulaktau quartz- and apatite-permineralized organic-walled specimens of Obruchevella spp. (1, 2, 5, 6) Obruchevella parva Reitlinger, 1959: (1, 2) 4681-366 (18), location point (p.) 7, England Finder Slide (EFS) H47[2], GINPC 201; (5, 6) 4681-366 (18), p. 2, EFS E44[1], GINPC 1253. (3, 4, 7, 8) Obruchevella parvisima Song, 1984: (3, 4) 4681-370 (116), p. 2, EFS M26[2], GINPC 205; (7, 8) 4681-1026 (273), p. 91, EFS V53[3], GINPC 1254.

Figure 8

Figure 9Optical photomicrographs (1, 3, 4, 7, 10) and confocal laser scanning micrographs (2, 5, 6, 8, 9, 11) of filamentous quartz- and apatite-permineralized organic-walled microfossils from the Chulaktau Formation. Parts of the specimen in (7), indicated by the arrows, are shown at higher magnification in the CLSM images in (8) and (9), whereas the upper part of the filament in (10) is shown in the CLSM image in (11). (1–6) Obruchevella parva Reitlinger, 1959: (1, 2) 4681-366 (18), specimen location point (p.) 10, England Finder Slide (EFS) H37[3], GINPC 1255; (3, 6) 4681-399 (103), p. 26, EFS P31[0], GINPC 1256; (4, 5) 4681-391 (102), p. 34, EFS P28[0], GINPC 1300. (7–9), Oscillatoriopsis cuboides Knoll, Strother and Rossi, 1988, 4681-403 (241), p. 18, EFS Q42[3], GINPC 198. (10, 11) Palaeolyngbya catenata Hermann, 1974, 4681-1026 (273), p. 50, EFS S31[1], GINPC 1257.

Figure 9

Figure 10Optical photomicrographs (1, 2, 5, 7, 9, 11) and confocal laser scanning micrographs (3, 4, 6, 8, 10, 12) of filamentous quartz- and apatite-permineralized organic-walled microfossils from the Chulaktau Formation. Parts of the specimen in (1), indicated by arrows, are shown at higher magnification in optical (2) and CLSM images (3, 4). (1–4, 9, 10) Palaeolyngbya catenata Hermann, 1974: (1–4) 4681-1026 (273), specimen location point (p.) 118, England Finder Slide (EFS) Z50[1], GINPC 1258; (9, 10) 4681-1026 (273), p. 126, EFS Z40[0], GINPC 1259. (5, 6) Oscillatoriopsis longa Timofeev and Hermann, 1979, 4681-391 (102), p. 33, EFS P42[0], GINPC 1260. (7, 8, 11, 12) Siphonophycus solidum Golub, 1979: (7, 8) 4681-391 (102), p. 21, EFS N31[0], GINPC 1261; (11, 12) 4681-391 (102), p. 14, EFS H32[4], GINPC 1262.

Figure 10

Figure 11Optical photomicrographs (1, 4, 7, 9–12) and confocal laser scanning micrographs (2, 3, 5, 6, 8, 13) of filamentous quartz- and apatite-permineralized organic-walled microfossils from the Chulaktau Formation. Parts of the specimen in (1), indicated by the arrows, are shown at higher magnification in the CLSM images in (2) and (3), whereas parts of the specimen in (4), indicated by the arrows, are shown in the CLSM images in (5) and (6). (1–6) Palaeolyngbya catenata Hermann, 1974: (1–3) 4681-1026 (273), specimen location point (p.) 55, England Finder Slide (EFS) S39[4], GINPC 1263; (4–6) 4681-1026 (273), p. 28, EFS O60[4], GINPC 1264. (7, 8) Oscillatoriopsis longa Timofeev and Hermann, 1979, 4681-1026 (273), p. 98, EFS V48[1], GINPC 1295. (9) Eomicrocoleus crassus Horodyski and Donaldson, 1980, 4681-1032 (273), p. 71, EFS Z28[1], GINPC 1265. (10) Chlorogloeaopsis contexta (Hermann, 1976), 4681-364 (102), p. 4a, EFS J48[2], GINPC 1266. (11) Siphonophycus robustum (Schopf, 1968), 4681-359 (15), p. 2, EFS G39[0], GINPC 1267. (12, 13) Palaeolyngbya sp., 4681-363 (99), p. 2, EFS E45[3], GINPC 1268.

Figure 11

Figure 12Optical photomicrographs (1, 3, 4, 6, 7, 10, 11, 13) and confocal laser scanning micrographs (2, 5, 8, 9, 12) of coccoidal colonial chert- and apatite-permineralized organic-walled microfossils from the Chulaktau Formation. (1, 2) Archaeophycus yunnanensis (Song in Luo et al., 1982), 4681-363 (99), location point (p.) 3, England Finder Slide (EFS) L44[1], GINPC 1271. (4, 5) Tetraphycus acutus Sergeev, 1989, 4681-363 (99), p. 1, EFS O41[3], GINPC 207. (3, 6, 7–13) Eoentophysalis belcherensis Hofmann, 1976: 3, 4681-399 (103), p. 24, EFS E38[1], GINPC 1272; 6, 4681-399 (103), p. 26, EFS P31[0], GINPC 1296; (7–9, 13) 4681-399 (103), p. 21, EFS M41[0], GINPC 1273; (10) 4681-399 (103), p. 26a, EFS P31[4], GINPC 1274; (11, 12) 4681-399 (103), p. 26d, EFS P31[0], GINPC 1275.

Figure 12

Figure 13Optical photomicrographs (1, 5, 6, 9–11, 13), confocal laser scanning micrographs (2, 7, 12, 14, 16), two-dimensional Raman images showing the spatial distribution of kerogen (3; blue, acquired at its ~1605 cm−1 major band) and apatite (4; red, acquired at its major band at ~965 cm−1), and optical images superimposed by kerogen 2-D Raman images (8, 15; blue) of quartz- and apatite-permineralized organic-walled microfossils from the Chulaktau Formation (1–5, 9, 10) and chert-permineralized specimens from the Berkuta Member of the Kyrshabakta Formation (6–8, 11–16). A part of the specimen in (1), indicated by the arrow, is shown in the Raman images in (3) and (4), whereas the part of a specimen denoted by the arrow in (13) is shown in the combined optical-Raman kerogen image in (15). (1–5) Botominella lineata Reitlinger, 1959: (1–4), 4681-365 (102), specimen location point (p.) 1, England Finder Slide (EFS) P47[3], GINPC 1282; 5, 4681-371 (117), p. 1, EFS F42[0], GINPC 1283. (6–8, 11–16) Berkutaphycus elongatus new genus and new species: (6–8) 4681-372 (115a), p. 25, EFS Q40[3], GINPC 1284; (11, 12) 4681-372 (115a), p. 1, EFS H38[0], GINPC 192; (13–15) 4681-372 (115a), p. 24, EFS H38[0], GINPC 1285; (16) 4681-382 (115a), p. 3, EFS Q42[0], GINPC 1286. (9) Leosphaeridia tenuissima Eisenack, 1958, 4681-371 (117), p. 7, EFS G39[2], GINPC 1287. (10) Leiosphaeridia minutissima (Naumova, 1949), 4681-364 (102), p. 4, J48[1], GINPC 1288.

Figure 13

Figure 14Optical photomicrographs (1, 3, 4, 7, 9–12) and confocal laser scanning micrographs (2, 5, 6, 8) of Chulaktau Formation coccoidal colonial and unicellular chert- and apatite-permineralized organic-walled microfossils. (1, 2, 4, 5) Cymatiosphaera sp.: (1, 2) 4681-1026 (273), specimen location point (p.) 17, England Finder Slide (EFS) F60[3], GINPC 1289. Although here referred to Cymatiosphaera, the numerous hemispherical cuspate structures situated on the inner wall of this specimen may be sites of apatite nucleation (cf. Fig. 3.16 and 3.17), an interpretation consistent with the resemblance of the elongate linear arcuate band that extends across the upper part of the spheroid interior to mineralic structures that are a result of void-filling crystallization. If not Cymatiosphaera, this specimen is probably an apatite-infilled leiosphaerid. (4, 5) 4681-367 (100), p. 5b, EFS P50[3], GINPC 1290. The upper hemisphere of this specimen of Cymatiosphaera was ground away during preparation of the fossil-bearing petrographic thin section resulting in exposure of the ring-like circularity of the medial plane of the specimen at the upper surface of the section. (3, 6) Vandalosphaeridium koksuicum Sergeev and Schopf, 2010, 4681-1026 (273), p. 130, EFS Q27[0], GINPC 1291. (7–9) Synodophycus sp.: (7, 8) 4681-367 (100), p. 5a, EFS P50[3], GINPC 1292; 9, 4681-413 (238), p. 10, U40[1], GINPC 214. (10) Myxococcoides inornata Schopf, 1968, 4681-364 (192), p. 10a, EFS P48[1], GINPC 1293. (11) Myxococcoides minor Schopf, 1968, 4681-359 (15), p. 3, EFS G31[0], GINPC 1294. (12) Eoaphanocapsa molle Sergeev, 1989, 4681-368 (98), p. 7, EFS INPC 209.