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A tutorial for using the open source JASP software for basic biostatistical analyses

Published online by Cambridge University Press:  06 November 2026

Diego A. Forero*
Affiliation:
School of Health and Sport Sciences, Fundación Universitaria del Área Andina , Bogotá, DC, Colombia
Pentti Nieminen
Affiliation:
Medical Informatics and Statistics Research Group, University of Oulu, Oulu, FI, Finland
Walter H. Curioso
Affiliation:
Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA
*
Corresponding author: D.A. Forero; Email: dforero41@areandina.edu.co
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Abstract

Biostatistical methods are currently one of the cornerstones of modern health sciences research. Open-source statistical programs are powerful, free tools for data management and advanced statistical analysis. JASP is one of the main open-source statistical software currently available worldwide. One of the possible facilitators for a broader use of open statistical software might be the availability of basic tutorials, which might be quite helpful for novel users. In this manuscript, we provide a user-friendly tutorial for basic statistical analyses using the open JASP software. The following statistical analyses are covered, with examples of the respective menus and of the resulting tables and figures: Descriptive statistics, normality testing, comparison of means between two groups, comparison of means between three or more groups, contingency tables and Pearson correlation. Promoting and facilitating, through detailed tutorials, the adequate implementation of user-friendly and open statistical software might contribute to the training of scientists around the world. The use of open software, in addition to facilitating access to researchers in environments with limited economic resources, has advantages in terms of reproducibility and transparency.

Information

Type
Review Article
Creative Commons
Creative Common License - CCCreative Common License - BY
This is an Open Access article, distributed under the terms of the Creative Commons Attribution licence (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted re-use, distribution and reproduction, provided the original article is properly cited.
Copyright
© The Author(s), 2026. Published by Cambridge University Press on behalf of Association for Clinical and Translational Science
Figure 0

Figure 1. A. A schematic overview of the upper menu of JASP (the arrows highlight the test covered in this tutorial). B. A schematic overview of the main menu of JASP. C. An overview of an example of a dataset. D. Datasets available in JASP and used in this tutorial.Figure 1 long description.

Figure 1

Figure 2. A. Example of a Q-Q plot. B. Example of a distribution plot. C. Example of a box plot. D. Example of a correlation plot.Figure 2 long description.

Figure 2

Figure 3. A. Menu for contingency tables. B. Example of R packages employed. C. Example of R code.Figure 3 long description.

Figure 3

Figure 4. A. Menu for descriptive statistics. B. Menu for independent samples t-test. C. Menu for independent ANOVA test. D. Menu for linear correlation.Figure 4 long description.

Figure 4

Figure 5. Figure 5 long description.A. Example of descriptive statistics. B. Example of results for an independent samples t-test C. Example of results for a paired samples t-test.

Figure 5

Figure 6. Decision-support flow diagram for selecting the basic statistical tests covered in this tutorial.Figure 6 long description.

Figure 6

Figure 7. A. Example of results for an independent samples ANOVA. B. Example of results for a repeated measures ANOVA.Figure 7 long description.

Figure 7

Figure 8. A. Example of results for a contingency table. B. Example of results for a linear correlation.Figure 8 long description.