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Genetic variability in the Physconia muscigena group (Physciaceae, Ascomycota) in the Northern Hemisphere

Published online by Cambridge University Press:  29 July 2020

Jakub Starosta
Affiliation:
Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01 Prague 2, Czech Republic
David Svoboda*
Affiliation:
Department of Botany, Faculty of Science, Charles University, Benátská 2, 128 01 Prague 2, Czech Republic
*
Author for correspondence: David Svoboda. E-mail: david.svoboda@email.cz

Abstract

The principal goal of our study was to test whether ecologically and chemically different populations of lichens in the Physconia muscigena group belong to a single, or multiple, species. We used sequence data from three markers (ITS rDNA, mtSSU rDNA and TEF1-α) for the reconstruction of phylogenetic trees based on a sampling of mostly European and Canadian populations of P. muscigena (Ach.) Poelt, P. muscigena var. bayeri (Nádv.) Poelt and P. isidiomuscigena Essl. In addition, we sought any possible geographical or ecological trends among chemotypes and haplotypes. Results show that: 1) sequence data of ITS rDNA and TEF1-α show large genetic variation in the Physconia muscigena group, which does not correlate with geographical distribution or thallus chemistry; 2) Physconia muscigena var. bayeri and P. isidiomuscigena appear undifferentiated with P. muscigena in our phylogenetic trees, and the three species cannot be distinguished on the basis of ITS rDNA, mtSSU rDNA and TEF1-α sequences. We therefore synonymized Physconia muscigena var. bayeri with P. muscigena and we recombine P. isidiomuscigena as a variety of P. muscigena.

Information

Type
Standard Papers
Copyright
Copyright © British Lichen Society 2020
Figure 0

Fig. 1. A, Physconia muscigena. B, P. isidiomuscigena with sorediate-isidiate propagules on the upper surface. Scales = 0.5 mm.

Figure 1

Table 1. Specimens of Physconia used for this study. Voucher specimens, location information, herbarium codes and GenBank Accession numbers are also listed. The DNA numbers are unique to this study and function as labels in the phylogenetic trees.

Figure 2

Table 2. Loci used for molecular analyses, with corresponding primer sequences and literature references.

Figure 3

Table 3. Characterization of sequence datasets used in the molecular analyses.

Figure 4

Fig. 2. Majority-rule consensus tree produced by the Bayesian (BI) and maximum likelihood (ML) analyses of the ITS rDNA sequences of Physconia species. Support values (BI/ML) are given above the branches. Physconia muscigena var. bayeri and P. isidiomuscigena sequences are in bold. Information for the sequences used are given in Table 1 and Supplementary Table S1 (available online). The tree is rooted with Anaptychia ciliaris. In colour online.

Figure 5

Fig. 3. Majority-rule consensus trees produced by the Bayesian (BI) and maximum likelihood (ML) analyses of the TEF1-α sequences of Physconia species. Support values (BI/ML) are given above the branches. Physconia muscigena var. bayeri and P. isidiomuscigena sequences are in bold. Information for the sequences used are given in Table 1 and Supplementary Table S1 (available online). The tree is rooted with Anaptychia palmatula. In colour online.

Figure 6

Fig. 4. Species tree inferred with *BEAST visualized using DensiTree (Bouckaert 2010): ITS rDNA + TEF1-α dataset. All trees created in the analysis are displayed (burn-in 25%). There are five clearly distinguishable clades, with large uncertainty of the topologies within the one 4-leaf clade of closely related species (distorta-detersa-venusta-perisidiosa). Analysis showed a different topology when P. muscigena* (including var. bayeri and P. isidiomuscigena) was used as one species (A), and when P. muscigena, P. muscigena var. bayeri and P. isidiomuscigena were included as different species (B).

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Fig. 5. Haplotype ITS network for Physconia muscigena; distribution of North American (NA) and European (EU) haplotypes. The size of the circles is approximately proportional to the number of sampled sequences of that haplotype, with the largest circle representing the ancestral clade. Perpendicular lines show mutation steps. In colour online.

Figure 8

Fig. 6. Haplotype ITS network for Physconia muscigena; presence of secondary metabolites in thallus. The size of the circles is approximately proportional to the number of sampled sequences of that haplotype, with the largest circle representing the ancestral clade. Perpendicular lines show mutation steps. In colour online.

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