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Genetic variability in Indian populations of banana corm weevil [Cosmopolites sordidus (Coleoptera: Curculionidae)] assessed by RAPDs and AFLPs

Published online by Cambridge University Press:  17 August 2017

Sweta Kumari U. Yadav
Affiliation:
Division of Biochemical Sciences, National Chemical Laboratory, Pune, 411008, India
Jyotsna Singh
Affiliation:
Division of Biochemical Sciences, National Chemical Laboratory, Pune, 411008, India
B. Padmanaban
Affiliation:
Department of Crop Protection (Entomology), National Research Centre for Banana, Thogamalai Road, Thayanur (PO), Tiruchirapalli, 620102, Tamil Nadu, India
Lalitha Sunil Kumar*
Affiliation:
Division of Biochemical Sciences, National Chemical Laboratory, Pune, 411008, India

Abstract

Cosmopolites sordidus (Germar), commonly known as banana corm weevil, is an important economic pest in Asia that can cause severe yield loss depending upon the stage at which infestation occurs. In spite of its economic importance, little is known about the population structure of this pest in India. Random amplified polymorphic DNA (RAPD) and amplified fragment length polymorphism (AFLP) were used to characterize the population genetic structure of C. sordidus collected from five hot spot locations in India. Nineteen RAPD primers and five selective AFLP primer combinations generated 147 and 304 amplification products, respectively. UPGMA dendrograms generated with both marker systems failed to reveal populations clustered based on geographic distance, which was confirmed by the Mantel test, which did not show a strong correlation between genetic distance and geographic distance. Values of indices of genetic identity showed that the populations were closely related. Though the gene flow estimate (Nm) between the populations was 0.469, suggesting restricted gene flow, the populations are not genetically distinct. These observations suggest that the range expansion of this banana pest in India has taken place through transport of infested corms and plant material, resulting in genetically close populations that are geographically distinct. These results provide important information on the population structure of this pest in India, which will aid in designing suitable strategies for its control and management, especially with respect to insecticide resistance.

Information

Type
Research Paper
Copyright
Copyright © icipe 2017 
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Table 1a. Examples of insect pests where RAPDs have proved useful in genetic diversity studies

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Table 1b. Examples of insect pests where AFLPs have proved useful in genetic diversity studies

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Fig. 1. Geographic distribution of the populations of Cosmopolites sordidus (Germar) used in the present study. [On the map, the solid squares refer to the collection sites. In the key below, the states are shown in parentheses and the geographical coordinates are shown in square brackets. n = the number of individuals used for RAPD analysis.]A – Narayangaon (Maharashtra) [19°7′22.45″N; 73°58′37.65″ E] (n = 6)B – Nanjangud (Karnataka) [12°7′N; 76°44′E] (n = 6)C – Calicut (Kerala) [11°14′52″ N; 75°46′49″E] (n = 6)D – Trichy (Tamil Nadu) [19°53′35.28″ N; 73°43′52.63″ E] (n = 6)E – Kamrup (Assam) [26°18′57.89″ N; 91°35′54.22″ E] (n = 5)].

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Table 2. Indices describing the polymorphism in the five populations of Cosmopolites sordidus (Germar) revealed by the 19 RAPD primers

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Table 3. Indices describing the polymorphism in the five populations of Cosmopolites sordidus (Germar) revealed by AFLPs

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Table 4. Gene diversity indices among Cosmopolites sordidus (Germar) populations from five locations in India based on RAPD analysis

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Table 5. Genetic distance (below diagonal) and genetic identity (above diagonal) indices+ for the five Cosmopolites sordidus (Germar) populations estimated using RAPDs

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Table 6. Comparison of different polymorphism and gene diversity indices of the RAPDs and AFLPs marker systems in the five populations of Cosmopolites sordidus (Germar)

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Table 7. Hierarchical analysis of molecular variance (AMOVA) for the five populations of Cosmopolites sordidus (Germar)

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Fig. 2. Dendrogram of 29 individuals of Cosmopolites sordidus (Germar) constructed from the genetic distance matrix estimated from the RAPD data and clustered using UPGMA.

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Fig. 3. Principal Component Analysis (PCA) of five populations of Cosmopolites sordidus (Germar) showing three distinct clusters.

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Fig. 4. Mantel test for correlation between genetic and geographical distance for the RAPDs data.

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Table 8. Pair-wise Nei's genetic identity (above diagonal) and genetic distance (below diagonal) between five populations of Cosmopolites sordidus (Germar) using AFLPs

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Fig. 5. Dendrogram of five Cosmopolites sordidus (Germar) populations constructed using the UPGMA method. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (500 replicates) is shown next to the branches. The evolutionary distances are in the units of the number of base substitutions per site.

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Fig. 6. Mantel test for correlation between genetic and geographical distance for AFLPs.