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Genetic evaluation and selection response for growth in meat-type quail through random regression models using B-spline functions and Legendre polynomials

Published online by Cambridge University Press:  14 August 2017

L. F. M. Mota
Affiliation:
Department of Animal Science, Faculty of Agricultural and Veterinary Science, State University of São Paulo, Jaboticabal, SP 14884-900, Brazil
P. G. M. A. Martins*
Affiliation:
Federal Institute of Northern Minas Gerais, Almenara, MG 39900-000, Brazil
T. O. Littiere
Affiliation:
Department of Animal Sciences, Federal University of Jequitinhonha and Mucuri Valleys, Diamantina, MG 39100-000, Brazil
L. R. A. Abreu
Affiliation:
School of Veterinary, Federal University of Minas Gerais, Belo Horizonte, MG 30123-970, Brazil
M. A. Silva
Affiliation:
Department of Animal Sciences, Federal University of Jequitinhonha and Mucuri Valleys, Diamantina, MG 39100-000, Brazil
C. M. Bonafé
Affiliation:
Department of Animal Sciences, Federal University of Jequitinhonha and Mucuri Valleys, Diamantina, MG 39100-000, Brazil

Abstract

The objective was to estimate (co)variance functions using random regression models (RRM) with Legendre polynomials, B-spline function and multi-trait models aimed at evaluating genetic parameters of growth traits in meat-type quail. A database containing the complete pedigree information of 7000 meat-type quail was utilized. The models included the fixed effects of contemporary group and generation. Direct additive genetic and permanent environmental effects, considered as random, were modeled using B-spline functions considering quadratic and cubic polynomials for each individual segment, and Legendre polynomials for age. Residual variances were grouped in four age classes. Direct additive genetic and permanent environmental effects were modeled using 2 to 4 segments and were modeled by Legendre polynomial with orders of fit ranging from 2 to 4. The model with quadratic B-spline adjustment, using four segments for direct additive genetic and permanent environmental effects, was the most appropriate and parsimonious to describe the covariance structure of the data. The RRM using Legendre polynomials presented an underestimation of the residual variance. Lesser heritability estimates were observed for multi-trait models in comparison with RRM for the evaluated ages. In general, the genetic correlations between measures of BW from hatching to 35 days of age decreased as the range between the evaluated ages increased. Genetic trend for BW was positive and significant along the selection generations. The genetic response to selection for BW in the evaluated ages presented greater values for RRM compared with multi-trait models. In summary, RRM using B-spline functions with four residual variance classes and segments were the best fit for genetic evaluation of growth traits in meat-type quail. In conclusion, RRM should be considered in genetic evaluation of breeding programs.

Information

Type
Research Article
Copyright
© The Animal Consortium 2017 
Figure 0

Table 1 Structure of the dataset utilized in the genetic evaluation of meat-type quail

Figure 1

Table 2 Descriptive statistics for the data utilized in analyses of meat-type quail

Figure 2

Table 3 Comparison of models by likelihood logarithm (log L), Bayesian Information Criterion (BIC) and Akaike Information Criterion (AIC) for meat-type quail

Figure 3

Figure 1 Estimates of the direct additive genetic $\left( {\sigma _{a}^{2} } \right)$, permanent environmental $\left( {\sigma _{{pe}}^{2} } \right)$, residual $\left( {\sigma _{e}^{2} } \right)$ and phenotypic $\left( {\sigma _{p}^{2} } \right)$ variances components obtained from LEG44 (□) and BSQ44 (◊) models, and by multi-trait analysis (∆). LEG=Legendre polynomial; BSQ=quadratic B-spline functions.

Figure 4

Figure 2 Direct heritability $\left( {h_{a}^{2} } \right)$ and permanent environmental $\left( {pe^{2} } \right)$ variance estimates as a proportion of total phenotypic variance obtained with models LEG44 (□), BSQ44 (◊) and by multi-trait analysis (∆). LEG=Legendre polynomial; BSQ=quadratic B-spline functions.

Figure 5

Table 4 Estimates of direct additive genetic (below the diagonal) and permanent environment (above the diagonal) correlations between BW from hatching to day 35 obtained from the BSQ44 model. Values within parenthesis are the SD

Figure 6

Figure 3 Genetic trend of breeding values for BW at day 0 (hatching), and at days 7, 14, 21, 28 and 35, according to selection generations in meat-type quail.

Figure 7

Figure 4 Genetic direct gain to BW in meat-type quail estimated by random regression models using functions BSQ44 (◊), LEG44 (□) and multi-trait models (∆). LEG=Legendre polynomial; BSQ=quadratic B-spline functions.