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Screening of cultivated and wild Helianthus species reveals herbicide tolerance in wild sunflowers and allelic variation at Ahasl1 (acetohydroxyacid synthase 1 large subunit) locus

Published online by Cambridge University Press:  05 April 2016

Jinu Jacob*
Affiliation:
ICAR-Indian Institute of Millets Research, Hyderabad, Telangana State, 500030, India
Mulpuri Sujatha
Affiliation:
ICAR-Indian Institute of Oilseeds Research, Hyderabad, Telangana State, 500030, India
Sivannarayana Kodeboyina Varaprasad
Affiliation:
ICAR-Indian Institute of Oilseeds Research, Hyderabad, Telangana State, 500030, India
*
*Corresponding author. E-mail: jinujacobk@gmail.com
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Abstract

Acetohydroxyacid synthase (AHAS) inhibiting herbicides have played a significant role in effective weed control in the cultivation of sunflower since their discovery. The development of sunflower lines and hybrids resistant to these herbicides made their post-emergence application possible. In this study, wild Helianthus species were screened phenotypically for imidazolinone (IMI) and sulfonylurea (SU) resistance by herbicide spray and for allelic variations at Ahasl1 (Ahas1 large subunit) locus using simple sequence repeat and single nucleotide polymorphism markers. Helianthus praecox accession 1823 plants showed promising resistance to three classes of SU-based herbicides and Helianthus nuttallii accession NUT05 plants remained green for a longer time after imazethapyr spray. A total of 50 accessions belonging to 21 wild Helianthus species of different ploidy levels were analysed for allelic variation along with some parents of commercial sunflower hybrids. None of the wild species showed the resistant allele (Ahasl1-1) similar to SCG101 (IMI-resistant line), although it is present in some of the parental lines of hybrids. However, the parental lines having Ahasl1-1-type allele failed to survive the field dose of imazethapyr spray. Inter-species and inter-accessional allelic variation could be observed among the species. PRA1823 and NUT05 showed repeat length variations at Ahasl1 locus. Sequencing of full length Ahasl1 gene from both these accessions did not reveal any resistance mutations in the protein sequences. The molecular basis of the phenotypes identified in this study could be explored further and utilized in breeding programmes for imparting herbicide resistance in cultivated hybrids across sunflower growing regions of the world.

Information

Type
Research Article
Copyright
Copyright © NIAB 2016 
Figure 0

Table 1. Wild Helianthus species along with their ploidy, habit and accessions used in the study

Figure 1

Fig. 1. Amplification of Ahasl1 gene fragment using AHAS16 and AHAS17 primer pair. Name of the accession is shown against the band in the gel. Band size is compared with a 100 bp DNA ladder (L).

Figure 2

Fig. 2. Multiple sequence alignment of SSR variation at Ahasl1 locus in cultivated and wild Helianthus species (ACC repeat sequences are italicized and underlined. * indicates conserved sequences).

Figure 3

Fig. 3. Multiple sequence alignment of deduced amino acid sequences of Ahasl1 proteins from A. thaliana (At), H. annuus (Ha), H. praecox 1823 (Pra1823) and H. nuttallii 05 (Nut05). Mutations in Ahasl1 that have been shown to confer herbicide resistance are shown in boxes and the amino acids numbers marked.

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