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Use of real-time semiquantitative PCR data in management of a neonatal intensive care unit adenovirus outbreak

Published online by Cambridge University Press:  18 July 2018

Nicholas D. Hysmith*
Affiliation:
Department of Pediatrics, Division of Infectious Diseases, University of Tennessee Health Science Center College of Medicine, Memphis, TennesseeInfection Prevention and Control Department, Le Bonheur Children’s Hospital, Memphis, Tennessee
Mary R. Tanner
Affiliation:
Department of Pediatrics, Division of Infectious Diseases, University of Tennessee Health Science Center College of Medicine, Memphis, TennesseeDepartment of Infectious Diseases, St. Jude Children’s Research Hospital, Memphis, Tennessee
Sandra R. Arnold
Affiliation:
Department of Pediatrics, Division of Infectious Diseases, University of Tennessee Health Science Center College of Medicine, Memphis, Tennessee
Steven C. Buckingham
Affiliation:
Department of Pediatrics, Division of Infectious Diseases, University of Tennessee Health Science Center College of Medicine, Memphis, TennesseeInfection Prevention and Control Department, Le Bonheur Children’s Hospital, Memphis, Tennessee
Anami R. Patel
Affiliation:
Department of Pediatrics, Division of Infectious Diseases, University of Tennessee Health Science Center College of Medicine, Memphis, TennesseeMethodist/Le Bonheur Molecular Diagnostics Laboratory, Le Bonheur Children’s Hospital, Memphis, Tennessee
Ramasubbareddy Dhanireddy
Affiliation:
Department of Pediatrics, Division of Neonatology, University of Tennessee Health Science Center College of Medicine, Memphis, Tennessee
Katha Comeaux
Affiliation:
Infection Prevention and Control Department, Le Bonheur Children’s Hospital, Memphis, Tennessee
Joy Joyner
Affiliation:
Infection Prevention and Control Department, Le Bonheur Children’s Hospital, Memphis, Tennessee
Mary Ellen Hoehn
Affiliation:
Department of Ophthalmology, University of Tennessee Health Science Center College of Medicine, Memphis, Tennessee
John P. DeVincenzo
Affiliation:
Department of Pediatrics, Division of Infectious Diseases, University of Tennessee Health Science Center College of Medicine, Memphis, TennesseeMethodist/Le Bonheur Molecular Diagnostics Laboratory, Le Bonheur Children’s Hospital, Memphis, TennesseeDepartment of Microbiology, Immunology, and Molecular Biology, University of Tennessee Health Science Center College of Medicine, Memphis, TennesseeChildren’s Foundation Research Institute, Le Bonheur Children’s Hospital, Memphis, Tennessee
*
Author for correspondence: Nicholas Hysmith MD, 49 North Dunlap Street, Room 294, Memphis, TN 38103. E-mail: nhysmith@uthsc.edu
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Abstract

Objective

To describe an adenovirus outbreak in a neonatal intensive care unit (NICU), including the use of qualitative and semiquantitative real-time polymerase chain reaction (qPCR) data to inform the outbreak response.

Design

Mixed prospective and retrospective observational study.

Setting

A level IV NICU in the southeastern United States.

Patients

Two adenovirus cases were identified in a NICU. Screening of all inpatients with qPCR on nasopharyngeal specimens revealed 11 additional cases.

Interventions

Outbreak response procedures, including enhanced infection control policies, were instituted. Serial qPCR studies were used to screen for new infections among exposed infants and to monitor viral clearance among cases. Changes to retinopathy of prematurity (ROP) exam procedures were made after an association was noted in those patients. At the end of the outbreak, a retrospective review allowed for comparison of clinical factors between the infected and uninfected groups.

Results

There were no new cases among patients after outbreak identification. One adenovirus-infected patient died; the others recovered their clinical baselines. The ROP exams were associated with an increased risk of infection (odds ratio [OR], 84.6; 95% confidence interval [CI], 4.5–1,601). The duration of the outbreak response was 33 days, and the previously described second wave of cases after the end of the outbreak did not occur. Revisions to infection control policies remained in effect following the outbreak.

Conclusions

Retinopathy of prematurity exams are potential mechanisms of adenovirus transmission, and autoclaved or single-use instruments should be used to minimize this risk. Real-time molecular diagnostic and quantification data guided outbreak response procedures, which rapidly contained and fully terminated a NICU adenovirus outbreak.

Information

Type
Original Article
Copyright
© 2018 by The Society for Healthcare Epidemiology of America. All rights reserved. 
Figure 0

Table 1Summary of Outbreak Response Infection Control Procedures

Figure 1

Fig. 1a. Timing of clinical findings for adenovirus-positive patients. The 13 adenovirus positive patients represented by rows with days from the initial symptomatic case represented as columns. Day 22 (darkly shaded column) indicates the identification of the outbreak. Legend: ∙, conjunctivitis diagnosis; °, conjunctivitis symptoms/topical ocular treatment; x, increased respiratory support, multiple potential etiologies; +, Increased respiratory support; ∞, death; *, topical ocular treatment continued: patient G to day 33 and patient I to day 37; ^, returned to baseline support on day 36. b. Adenovirus type. Adenovirus types corresponding to the clinical symptoms illustrated in Fig. 1a. Patient K was PCR positive, however, typing was not possible as the virus did not grow in tissue culture. This has been denoted as (−).

Figure 2

Fig. 2Respiratory log viral load concentrations relative to other anatomic sites from autopsy tissues of deceased patient. Tissue specific semiquantitative PCRs were performed without flushing of blood from the specimens. The log viral load concentrations are represented relative to those in the kidney.

Figure 3

Table 2Comparison of Uninfected and Infected Groups at Outbreak Identification

Figure 4

Fig. 3Population viral load. The vertical axis of this figure shows the mean adenovirus viral load encountered within the entire outbreak investigation. This viral load is represented by the mean 45 minus the CT values of all patients tested at that time point with corresponding 95% confidence intervals. Once patients were discharged from the unit, they were removed from the analysis. The horizontal axis represents the initial qPCR screen at the time of outbreak identification followed by measurements 3 times weekly for the duration of the outbreak response (day 33).