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Multi-scale statistics of turbulence motorized by active matter

Published online by Cambridge University Press:  08 June 2017

J. Urzay*
Affiliation:
Center for Turbulence Research, Stanford University, CA 94305-3024, USA
A. Doostmohammadi
Affiliation:
Rudolf Peierls Centre for Theoretical Physics, University of Oxford, OX1 3NP, UK
J. M. Yeomans
Affiliation:
Rudolf Peierls Centre for Theoretical Physics, University of Oxford, OX1 3NP, UK
*
†Email address for correspondence: jurzay@stanford.edu

Abstract

A number of micro-scale biological flows are characterized by spatio-temporal chaos. These include dense suspensions of swimming bacteria, microtubule bundles driven by motor proteins and dividing and migrating confluent layers of cells. A characteristic common to all of these systems is that they are laden with active matter, which transforms free energy in the fluid into kinetic energy. Because of collective effects, the active matter induces multi-scale flow motions that bear strong visual resemblance to turbulence. In this study, multi-scale statistical tools are employed to analyse direct numerical simulations (DNS) of periodic two-dimensional (2-D) and three-dimensional (3-D) active flows and to compare the results to classic turbulent flows. Statistical descriptions of the flows and their variations with activity levels are provided in physical and spectral spaces. A scale-dependent intermittency analysis is performed using wavelets. The results demonstrate fundamental differences between active and high-Reynolds-number turbulence; for instance, the intermittency is smaller and less energetic in active flows, and the work of the active stress is spectrally exerted near the integral scales and dissipated mostly locally by viscosity, with convection playing a minor role in momentum transport across scales.

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Papers
Copyright
© 2017 Cambridge University Press 
Figure 0

Figure 1.Instantaneous contours of (a) velocity magnitude (high activity, main panel; low activity, inset), (b) vorticity and (c) magnitude of the nematic tensor. In (b,c), which are zoomed views of the white squared region in (a), green lines are nematic director fields while symbols represent $+1/2$ (circles) and $-1/2$ (triangles) topological defects. The small inset above (c) shows the director field around topological defects.

Figure 1

Figure 2.(a) Instantaneous isosurfaces of velocity magnitude $(u_{i}u_{i})^{1/2}/u^{\prime }=1.1$ (30 % of maximum value) and enstrophy $\unicode[STIX]{x1D714}_{i}\unicode[STIX]{x1D714}_{i}(\ell _{d}/u^{\prime })^{2}=0.4$ (20 % of maximum value) for 3-D simulations. (b) Scatter plot of the velocity-gradient invariants. (c) Schematics of the stresslet-like flow induced by extensile active particles ($\unicode[STIX]{x1D701}>0$).

Figure 2

Figure 3.Ensemble-averaged PDFs of (a) velocity, (b) velocity gradient, (c) vorticity and (d) nematic-order magnitude, including three dimensions ($\unicode[STIX]{x1D701}=\unicode[STIX]{x1D701}_{0}$, solid lines) and two dimensions ($\unicode[STIX]{x1D701}=\unicode[STIX]{x1D701}_{0}$, dot-dashed lines; $\unicode[STIX]{x1D701}=\unicode[STIX]{x1D701}_{0}/10$, dashed lines). Red short dashed lines indicate reference Gaussian distributions.

Figure 3

Table 1.Moments of velocity, velocity derivative and vorticity PDFs.

Figure 4

Figure 4.Wavelet-based scale-dependent flatness (main frames) for velocity and vorticity in (a) 2-D and (b) 3-D cases at $\unicode[STIX]{x1D701}=\unicode[STIX]{x1D701}_{0}$, along with corresponding scale-conditioned PDFs (insets) of the wavelet coefficients. The PDFs are conditioned on $s=1$ (dark blue lines) $s=2$ (red), $s=3$ (orange), $s=4$ (purple), $s=5$ (green) and $s=6$ (light blue).

Figure 5

Figure 5.Ensemble-averaged Fourier and wavelet spectra of kinetic energy. The solid contours in (d–f) correspond to the PDF of the wavelet spectra, which include the mean (solid lines) and associated 95 % confidence intervals (dashed lines).

Figure 6

Figure 6.Mean and 95 % confidence intervals of wavelet-based spectral energy-transfer flux of the 3-D flow for (a) active and convective fluxes and (b) viscous flux. The panels also show solid contours for PDFs of (a) active and (b) viscous fluxes, indicating spatial variabilities.